Ghosh Dipan, Lahiri Priyanka, Verma Hitesh, Mukherjee Somnath, Chatterjee Jayanta
Molecular Biophysics Unit , Indian Institute of Science , Bangalore 560012 , India . Email:
Chem Sci. 2016 Aug 1;7(8):5212-5218. doi: 10.1039/c6sc00518g. Epub 2016 Apr 21.
There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro-l-Pro, d-Pro-Gly or Asn-Gly as the turn inducing motif restricting their biological application and physicochemical modulation. In this report, for the first time we elucidate that -methylation of heterochiral amino acids in linear peptides nucleates β-sheet conformation without the necessity of having a ring or covalent constraint at the reverse turn. Our results show that d-Pro can be conveniently substituted by any other -methylated d-amino acid followed by an -methylated l-amino acid or sarcosine to adopt a βII' turn inducing the β-sheet folding. Furthermore, we reveal that a single amino acid either at the + 1 or + 2 site of the reverse turn can modulate the right-handed twist, which eventually dictates the extent of the foldedness of the β-hairpin.
在设计的肽、蛋白质和折叠体中,引发β-折叠构象的反向转角基序缺乏官能团多样性。这些序列中的大多数由d-脯氨酸-l-脯氨酸、d-脯氨酸-甘氨酸或天冬酰胺-甘氨酸作为转角诱导基序组成,这限制了它们的生物学应用和物理化学调控。在本报告中,我们首次阐明,线性肽中杂手性氨基酸的α-甲基化可引发β-折叠构象,而无需在反向转角处具有环或共价约束。我们的结果表明,d-脯氨酸可以方便地被任何其他α-甲基化的d-氨基酸取代,随后是α-甲基化的l-氨基酸或肌氨酸,以形成诱导β-折叠的βII'转角。此外,我们发现,反向转角的+1或+2位点上的单个氨基酸可以调节右手扭转,这最终决定了β-发夹的折叠程度。