Department of Bio and Health Informatics, Technical University of Denmark, Lyngby, Denmark; Dana-Farber Cancer Institute, Harvard Medical School, Boston, USA.
Dana-Farber Cancer Institute, Harvard Medical School, Boston, USA.
Ann Oncol. 2018 Apr 1;29(4):903-909. doi: 10.1093/annonc/mdy049.
Platinum-based therapy is an effective treatment for a subset of triple-negative breast cancer and ovarian cancer patients. In order to increase response rate and decrease unnecessary use, robust biomarkers that predict response to therapy are needed.
We performed an integrated genomic approach combining differential analysis of gene expression and DNA copy number in sensitive compared with resistant triple-negative breast cancers in two independent neoadjuvant cisplatin-treated cohorts. Functional relevance of significant hits was investigated in vitro by overexpression, knockdown and targeted inhibitor treatment.
We identified two genes, the Bloom helicase (BLM) and Fanconi anemia complementation group I (FANCI), that have both increased DNA copy number and gene expression in the platinum-sensitive cases. Increased level of expression of these two genes was also associated with platinum but not with taxane response in ovarian cancer. As a functional validation, we found that overexpression of BLM promotes DNA damage and induces sensitivity to cisplatin but has no effect on paclitaxel sensitivity.
A biomarker based on the expression levels of the BLM and FANCI genes is a potential predictor of platinum sensitivity in triple-negative breast cancer and ovarian cancer.
铂类药物治疗是三阴性乳腺癌和卵巢癌患者亚群的有效治疗方法。为了提高反应率并减少不必要的使用,需要有预测治疗反应的强大生物标志物。
我们在两个独立的新辅助顺铂治疗队列中,对敏感与耐药的三阴性乳腺癌进行了基因表达和 DNA 拷贝数差异分析,结合了综合基因组方法。通过过表达、敲低和靶向抑制剂处理,研究了显著命中的功能相关性。
我们发现了两个基因,即 Bloom 解旋酶 (BLM) 和范可尼贫血互补组 I (FANCI),它们在铂类敏感病例中都有增加的 DNA 拷贝数和基因表达。这两个基因的表达水平增加也与铂类药物有关,但与紫杉醇反应无关。作为功能验证,我们发现 BLM 的过表达可促进 DNA 损伤,并诱导对顺铂的敏感性,但对紫杉醇的敏感性没有影响。
基于 BLM 和 FANCI 基因表达水平的生物标志物是三阴性乳腺癌和卵巢癌铂类药物敏感性的潜在预测因子。