NMR Research Unit, University of Oulu , P.O. Box 3000, FI-90014 , Finland.
ENSEIRB-MATMECA (Bordeaux INP) , 1 avenue du Dr. Albert Schweitzer , B.P. 99, 33402 Talence Cedex, France.
Langmuir. 2018 Mar 27;34(12):3755-3766. doi: 10.1021/acs.langmuir.7b04156. Epub 2018 Mar 14.
A general model for nuclear magnetic resonance (NMR) relaxation studies of fluid bilayer systems is introduced, combining a mesoscopic Brownian dynamics description of the bilayer with atomistic molecular dynamics (MD) simulations. An example is given for dipalmitoylphosphatidylcholine in HO solvent and compared with the experiment. Experimental agreement is within a factor of 2 in the water relaxation rates, based on a postulated model with fixed parameters, which are largely available from the MD simulation. Relaxation rates are particularly sensitive to the translational diffusion of water perturbed by the interface dynamics and structure. Simulation results suggest that a notable deviation in the relaxation rates may follow from the commonly used small-angle approximation of bilayer undulation. The method has the potential to overcome the temporal and spatial limitations in computing NMR relaxation with atomistic MD, as well as the shortcomings of continuum models enabling a consistent description of experiments performed on a solvent lipid and added spin probes. This work opens for possibilities to understand relaxation processes involving systems such as micelles, multilamellar vesicles, red blood cells, and so forth at biologically relevant timescales in great detail.
引入了一种用于研究流体双层系统核磁共振(NMR)弛豫的通用模型,该模型将双层的介观布朗动力学描述与原子分子动力学(MD)模拟相结合。以 HO 溶剂中的二棕榈酰磷脂酰胆碱(DPPC)为例,并与实验进行了比较。基于具有固定参数的假定模型,实验结果与水弛豫率的因子为 2 相吻合,这些参数主要可从 MD 模拟中获得。弛豫率对受界面动力学和结构影响的水的平移扩散特别敏感。模拟结果表明,由于双层波动的常用小角度近似,弛豫率可能会出现显著偏差。该方法有可能克服使用原子 MD 计算 NMR 弛豫的时间和空间限制,以及克服能够一致描述在溶剂脂质和添加的自旋探针上进行的实验的连续体模型的缺点。这项工作为在生物相关的时间尺度上详细了解涉及胶束、多层囊泡、红细胞等系统的弛豫过程提供了可能性。