Dong Sijia S, Gagliardi Laura, Truhlar Donald G
Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN 55455, USA.
Phys Chem Chem Phys. 2018 Mar 7;20(10):7265-7276. doi: 10.1039/c7cp07275a.
Retinal is the chromophore in proteins responsible for vision. The absorption maximum of retinal is sensitive to mutations of the protein. However, it is not easy to predict the absorption spectrum of retinal accurately, and questions remain even after intensive investigation. Retinal poses a challenge for Kohn-Sham density functional theory (KS-DFT) because of the charge transfer character in its excitations, and it poses a challenge for wave function theory because the large size of the molecule makes multiconfigurational perturbation theory methods expensive. In this study, we demonstrate that multiconfiguration pair-density functional theory (MC-PDFT) provides an efficient way to predict the vertical excitation energies of 11-Z retinal, and it reproduces the experimentally determined absorption band widths and peak positions better than complete active space second-order perturbation theory (CASPT2). The consistency between complete active space self-consistent field (CASSCF) and KS-DFT dipole moments is demonstrated to be a useful criterion in selecting the active space. We also found that the nature of the terminal groups and the conformations of retinal play a significant role in the absorption spectrum. By considering a thermal distribution of conformations, we predict an absorption spectrum of retinal that is consistent with the experimental gas-phase spectrum. The location of the absorption peak and the spectral broadening based on MC-PDFT calculations agree better with experiments than those of CASPT2.
视黄醛是负责视觉的蛋白质中的发色团。视黄醛的最大吸收波长对蛋白质的突变很敏感。然而,准确预测视黄醛的吸收光谱并非易事,即使经过深入研究,问题仍然存在。视黄醛因其激发态中的电荷转移特性,对Kohn-Sham密度泛函理论(KS-DFT)构成挑战;又因其分子尺寸较大,使得多组态微扰理论方法成本高昂,对视波函数理论也构成挑战。在本研究中,我们证明了多组态对密度泛函理论(MC-PDFT)为预测11-Z视黄醛的垂直激发能提供了一种有效方法,并且它比完全活性空间二阶微扰理论(CASPT2)能更好地重现实验测定的吸收带宽和峰位。完全活性空间自洽场(CASSCF)与KS-DFT偶极矩之间的一致性被证明是选择活性空间的一个有用标准。我们还发现末端基团的性质和视黄醛的构象在吸收光谱中起着重要作用。通过考虑构象的热分布,我们预测了与实验气相光谱一致的视黄醛吸收光谱。基于MC-PDFT计算的吸收峰位置和光谱展宽比CASPT2的结果与实验结果更吻合。