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基于遗传编程的植物组织培养模型:对传统统计方法的补充。

Genetic programming based models in plant tissue culture: An addendum to traditional statistical approach.

机构信息

Department of Botany, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, India.

Department of Future Studies, University of Kerala, Kariavattom, Thiruvananthapuram, Kerala, India.

出版信息

PLoS Comput Biol. 2018 Feb 27;14(2):e1005976. doi: 10.1371/journal.pcbi.1005976. eCollection 2018 Feb.

Abstract

In this paper, we compared the efficacy of observation based modeling approach using a genetic algorithm with the regular statistical analysis as an alternative methodology in plant research. Preliminary experimental data on in vitro rooting was taken for this study with an aim to understand the effect of charcoal and naphthalene acetic acid (NAA) on successful rooting and also to optimize the two variables for maximum result. Observation-based modelling, as well as traditional approach, could identify NAA as a critical factor in rooting of the plantlets under the experimental conditions employed. Symbolic regression analysis using the software deployed here optimised the treatments studied and was successful in identifying the complex non-linear interaction among the variables, with minimalistic preliminary data. The presence of charcoal in the culture medium has a significant impact on root generation by reducing basal callus mass formation. Such an approach is advantageous for establishing in vitro culture protocols as these models will have significant potential for saving time and expenditure in plant tissue culture laboratories, and it further reduces the need for specialised background.

摘要

在本文中,我们比较了基于遗传算法的观察建模方法与常规统计分析的功效,将其作为植物研究中的替代方法。本研究采用初步的离体生根实验数据,旨在了解木炭和萘乙酸(NAA)对生根成功的影响,并优化这两个变量以获得最佳结果。基于观察的建模以及传统方法都可以确定 NAA 是实验条件下植物生根的关键因素。使用部署在这里的软件进行的符号回归分析优化了所研究的处理方法,并成功地识别了变量之间复杂的非线性相互作用,同时使用了最小的初步数据。培养基中木炭的存在通过减少基础愈伤组织质量的形成对根的产生有显著影响。这种方法有利于建立体外培养方案,因为这些模型将在植物组织培养实验室中具有显著的节省时间和支出的潜力,并且进一步减少了对专业背景的需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ce8/5828343/334ee04da1a9/pcbi.1005976.g001.jpg

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