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新型罗尔斯通氏菌噬菌体RPSC1的基因组特征分析

Genomic characterization of the novel Ralstonia phage RPSC1.

作者信息

Liao Min

机构信息

College of Life Science & Biotechnology, Mianyang Teachers' College, 166# Mianxingdong Rd, Mianyang, 621000, Sichuan, China.

出版信息

Arch Virol. 2018 Jul;163(7):1969-1971. doi: 10.1007/s00705-018-3713-1. Epub 2018 Mar 9.

DOI:10.1007/s00705-018-3713-1
PMID:29523968
Abstract

In this paper, I describe the genomic characteristics of a Ralstonia phage infecting Ralstonia solanacearum. The Ralstonia phage RPSC1 was isolated from a soil sample collected in Sichuan Province, in southwestern China. The complete genome of RPSC1 is composed of a linear double-stranded DNA 39,628 bp in length, with G+C content of 61.55%, and 43 putative protein-coding genes. All the putative protein-coding genes were on the same strand. No tRNA-encoding genes were identified. Phylogenetic and comparative genomics analyses indicate that Ralstonia phage RPSC1 should be considered a new member of the family Podoviridae. The wide host range contributes to the potential of Ralstonia phage RPSC1 as a biocontrol agent.

摘要

在本文中,我描述了一种感染青枯雷尔氏菌的雷尔氏菌噬菌体的基因组特征。雷尔氏菌噬菌体RPSC1是从中国西南部四川省采集的土壤样本中分离出来的。RPSC1的完整基因组由一条长度为39,628 bp的线性双链DNA组成,G+C含量为61.55%,有43个推定的蛋白质编码基因。所有推定的蛋白质编码基因都在同一条链上。未鉴定到编码tRNA的基因。系统发育和比较基因组学分析表明,雷尔氏菌噬菌体RPSC1应被视为短尾噬菌体科的一个新成员。广泛的宿主范围赋予了雷尔氏菌噬菌体RPSC1作为生物防治剂的潜力。

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