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本文引用的文献

1
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
2
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
3
Genome sequence-based species delimitation with confidence intervals and improved distance functions.基于基因组序列的具有置信区间和改进距离函数的物种界定。
BMC Bioinformatics. 2013 Feb 21;14:60. doi: 10.1186/1471-2105-14-60.
4
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
5
Pathogenicity of Vibrio penaeicida for white shrimp Litopenaeus vannamei: a cysteine protease-like exotoxin as a virulence factor.
Dis Aquat Organ. 2005 Nov 28;67(3):201-7. doi: 10.3354/dao067201.

从日本患病虾中分离出的对虾弧菌TUMSAT-NU1菌株的基因组序列草图

Draft Genome Sequence of Vibrio penaeicida Strain TUMSAT-NU1, Isolated from Diseased Shrimp in Japan.

作者信息

Kawato Satoshi, Nozaki Reiko, Kondo Hidehiro, Hirono Ikuo

机构信息

Laboratory of Genome Science, Tokyo University of Marine Science and Technology, Tokyo, Japan.

Laboratory of Genome Science, Tokyo University of Marine Science and Technology, Tokyo, Japan

出版信息

Genome Announc. 2018 Mar 15;6(11):e00153-18. doi: 10.1128/genomeA.00153-18.

DOI:10.1128/genomeA.00153-18
PMID:29545299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5854779/
Abstract

is a bacterial pathogen of cultured shrimp. The draft genome sequence of strain TUMSAT-NU1 consists of 100 scaffolds with a total of 6.41 Mbp. We identified possible virulence factors, and we found that and are closely related.

摘要

是养殖虾的一种细菌病原体。菌株TUMSAT-NU1的基因组序列草图由100个支架组成，总共641万碱基对。我们鉴定了可能的毒力因子，并且发现[此处原文缺失两个相关内容]和[此处原文缺失两个相关内容]密切相关。