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鸟类物种微卫星错配及其与体重关联的全基因组研究。

A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species.

作者信息

Fan Haiying, Guo Weibin

机构信息

Department of Ecology, College of Life Sciences, Wuhan University, Wuhan, China.

出版信息

PeerJ. 2018 Mar 14;6:e4495. doi: 10.7717/peerj.4495. eCollection 2018.

Abstract

Mutation rate is usually found to covary with many life history traits of animals such as body mass, which has been readily explained by the higher number of mutation opportunities per unit time. Although the precise reason for the pattern is not yet clear, to determine the universality of this pattern, we tested whether life history traits impact another form of genetic mutation, the motif mismatches in microsatellites. Employing published genome sequences from 65 avian species, we explored the motif mismatches patterns of microsatellites in birds on a genomic level and assessed the relationship between motif mismatches and body mass in a phylogenetic context. We found that small-bodied species have a higher average mismatches and we suggested that higher heterozygosity in imperfect microsatellites lead to the increase of motif mismatches. Our results obtained from this study imply that a negative body mass trend in mutation rate may be a general pattern of avian molecular evolution.

摘要

通常发现突变率与动物的许多生活史特征相关,如体重,这很容易用单位时间内更多的突变机会来解释。尽管这种模式的确切原因尚不清楚,但为了确定这种模式的普遍性,我们测试了生活史特征是否会影响另一种基因突变形式,即微卫星中的基序错配。利用65种鸟类已发表的基因组序列,我们在基因组水平上探索了鸟类微卫星的基序错配模式,并在系统发育背景下评估了基序错配与体重之间的关系。我们发现体型较小的物种平均错配率更高,我们认为不完全微卫星中较高的杂合性导致了基序错配的增加。我们从这项研究中获得的结果表明,突变率与体重呈负相关趋势可能是鸟类分子进化的普遍模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/792b/5857172/73e21db12fa9/peerj-06-4495-g001.jpg

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