Ji Yanzhu, Feng Shaohong, Wu Lei, Fang Qi, Brüniche-Olsen Anna, DeWoody J Andrew, Cheng Yalin, Zhang Dezhi, Hao Yan, Song Gang, Qu Yanhua, Suh Alexander, Zhang Guojie, Hackett Shannon J, Lei Fumin
Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USA.
Sci Adv. 2022 Sep 2;8(35):eabo0099. doi: 10.1126/sciadv.abo0099. Epub 2022 Aug 31.
The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation time and body mass contribute to the interspecific variation of orthologous microsatellite length, transposable element (TE) length, and deletion length and how these genomic attributes affect genome sizes. In nonpasserines, we found that generation time is correlated to both orthologous microsatellite length and TE length, and body mass is negatively correlated to DNA deletions. These patterns are less pronounced in passerines. In all species, we found that DNA deletions relate to genome size similarly as TE length, suggesting a role of body mass dynamics in genome evolution. Our results indicate that generation time and body mass shape the evolution of genomic attributes in neoavian birds.
生殖细胞中突变积累的速率会受到细胞复制和/或DNA损伤的影响,而这两者又与诸如世代时间和体重等生活史特征密切相关。利用现有的233种新鸟亚纲鸟类的数据集,我们在此研究了世代时间和体重是否会导致直系微卫星长度、转座元件(TE)长度和缺失长度的种间差异,以及这些基因组特征如何影响基因组大小。在非雀形目鸟类中,我们发现世代时间与直系微卫星长度和TE长度均相关,而体重与DNA缺失呈负相关。这些模式在雀形目鸟类中不太明显。在所有物种中,我们发现DNA缺失与基因组大小的关系与TE长度类似,这表明体重动态在基因组进化中发挥了作用。我们的结果表明,世代时间和体重塑造了新鸟亚纲鸟类基因组特征的进化。