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牛黄体成熟的基因组分析。

Genomic profiling of bovine corpus luteum maturation.

机构信息

Department of Animal Sciences, The Robert H. Smith Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot, Israel.

Bioinformatics unit, Department of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.

出版信息

PLoS One. 2018 Mar 28;13(3):e0194456. doi: 10.1371/journal.pone.0194456. eCollection 2018.

Abstract

To unveil novel global changes associated with corpus luteum (CL) maturation, we analyzed transcriptome data for the bovine CL on days 4 and 11, representing the developing vs. mature gland. Our analyses revealed 681 differentially expressed genes (363 and 318 on day 4 and 11, respectively), with ≥2 fold change and FDR of <5%. Different gene ontology (GO) categories were represented prominently in transcriptome data at these stages (e.g. days 4: cell cycle, chromosome, DNA metabolic process and replication and on day 11: immune response; lipid metabolic process and complement activation). Based on bioinformatic analyses, select genes expression in day 4 and 11 CL was validated with quantitative real-time PCR. Cell specific expression was also determined in enriched luteal endothelial and steroidogenic cells. Genes related to the angiogenic process such as NOS3, which maintains dilated vessels and MMP9, matrix degrading enzyme, were higher on day 4. Importantly, our data suggests day 11 CL acquire mechanisms to prevent blood vessel sprouting and promote their maturation by expressing NOTCH4 and JAG1, greatly enriched in luteal endothelial cells. Another endothelial specific gene, CD300LG, was identified here in the CL for the first time. CD300LG is an adhesion molecule enabling lymphocyte migration, its higher levels at mid cycle are expected to support the transmigration of immune cells into the CL at this stage. Together with steroidogenic genes, most of the genes regulating de-novo cholesterol biosynthetic pathway (e.g HMGCS, HMGCR) and cholesterol uptake from plasma (LDLR, APOD and APOE) were upregulated in the mature CL. These findings provide new insight of the processes involved in CL maturation including blood vessel growth and stabilization, leucocyte transmigration as well as progesterone synthesis as the CL matures.

摘要

为了揭示与黄体(CL)成熟相关的新的全球变化,我们分析了牛 CL 在第 4 天和第 11 天的转录组数据,代表了正在发育的和成熟的腺体。我们的分析显示,有 681 个差异表达基因(第 4 天和第 11 天分别有 363 个和 318 个),其变化倍数≥2,FDR<5%。在这些阶段的转录组数据中,不同的基因本体(GO)类别得到了突出的体现(例如,第 4 天:细胞周期、染色体、DNA 代谢过程和复制,第 11 天:免疫反应;脂质代谢过程和补体激活)。基于生物信息学分析,用定量实时 PCR 验证了第 4 天和第 11 天 CL 中选择基因的表达。还在富集的黄体内皮细胞和类固醇生成细胞中确定了细胞特异性表达。与血管生成过程相关的基因,如维持扩张血管的 NOS3 和基质降解酶 MMP9,在第 4 天表达更高。重要的是,我们的数据表明,第 11 天的 CL 通过表达 NOTCH4 和 JAG1 获得了防止血管发芽和促进其成熟的机制,NOTCH4 和 JAG1 在黄体内皮细胞中大量富集。在这里,我们首次在 CL 中发现了另一种内皮细胞特异性基因 CD300LG。CD300LG 是一种允许淋巴细胞迁移的粘附分子,其在中期的高水平预计将支持免疫细胞在这一阶段迁移到 CL。与类固醇生成基因一起,调节从头胆固醇生物合成途径的大多数基因(例如 HMGCS、HMGCR)和从血浆中摄取胆固醇的基因(LDLR、APOD 和 APOE)在成熟的 CL 中上调。这些发现为 CL 成熟过程提供了新的见解,包括血管生长和稳定、白细胞迁移以及 CL 成熟时孕激素的合成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2a2/5874041/3ed4f37d74cc/pone.0194456.g001.jpg

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