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病毒组装中质量作用的不同表现形式。

The different faces of mass action in virus assembly.

作者信息

van der Holst Bart, Kegel Willem K, Zandi Roya, van der Schoot Paul

机构信息

Department of Applied Physics, Eindhoven University of Technology, Eindhoven, The Netherlands.

Department of Chemistry, Utrecht University, Utrecht, The Netherlands.

出版信息

J Biol Phys. 2018 Jun;44(2):163-179. doi: 10.1007/s10867-018-9487-6. Epub 2018 Apr 3.

Abstract

The spontaneous encapsulation of genomic and non-genomic polyanions by coat proteins of simple icosahedral viruses is driven, in the first instance, by electrostatic interactions with polycationic RNA binding domains on these proteins. The efficiency with which the polyanions can be encapsulated in vitro, and presumably also in vivo, must in addition be governed by the loss of translational and mixing entropy associated with co-assembly, at least if this co-assembly constitutes a reversible process. These forms of entropy counteract the impact of attractive interactions between the constituents and hence they counteract complexation. By invoking mass action-type arguments and a simple model describing electrostatic interactions, we show how these forms of entropy might settle the competition between negatively charged polymers of different molecular weights for co-assembly with the coat proteins. In direct competition, mass action turns out to strongly work against the encapsulation of RNAs that are significantly shorter, which is typically the case for non-viral (host) RNAs. We also find that coat proteins favor forming virus particles over nonspecific binding to other proteins in the cytosol even if these are present in vast excess. Our results rationalize a number of recent in vitro co-assembly experiments showing that short polyanions are less effective at attracting virus coat proteins to form virus-like particles than long ones do, even if both are present at equal weight concentrations in the assembly mixture.

摘要

简单二十面体病毒的衣壳蛋白对基因组和非基因组多阴离子的自发包裹,首先是由这些蛋白上带聚阳离子的RNA结合结构域的静电相互作用驱动的。多阴离子在体外以及推测在体内的包裹效率,还必定受与共组装相关的翻译熵和混合熵损失的支配,至少如果这种共组装是一个可逆过程的话。这些熵的形式会抵消组分间吸引相互作用的影响,从而抵消络合作用。通过运用质量作用类型的论据和一个描述静电相互作用的简单模型,我们展示了这些熵的形式如何解决不同分子量的带负电聚合物与衣壳蛋白共组装的竞争问题。在直接竞争中,质量作用结果强烈不利于明显较短RNA的包裹,非病毒(宿主)RNA通常就是这种情况。我们还发现,即使胞质溶胶中的其他蛋白质大量存在,衣壳蛋白也更倾向于形成病毒颗粒而非与其非特异性结合。我们的结果解释了最近的一些体外共组装实验,这些实验表明,即使短多阴离子和长多阴离子在组装混合物中的重量浓度相等,短多阴离子在吸引病毒衣壳蛋白形成病毒样颗粒方面也不如长多阴离子有效。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fde1/5928020/ff728bb094c1/10867_2018_9487_Fig1_HTML.jpg

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