Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research , Bangalore 560 064 , India.
J Phys Chem B. 2018 May 10;122(18):4802-4812. doi: 10.1021/acs.jpcb.8b02296. Epub 2018 Apr 26.
Lipases exhibit a unique process during the catalysis of the hydrolysis of triglyceride substrates called interfacial activation. Surfactants are used as cosolvents with water not only to offer a less polar environment to the lipases needed for their interfacial activation but also to solvate the substrate which are poorly soluble in water. However, the presence of detergent in the medium can affect both the lipase and the substrate, making the construction of a microkinetic model for lipase activity in the presence of the detergent difficult. Herein, we study the interfacial activation of a lidless lipase LipA from Bacillus subtilis using extensive atomistic molecular dynamics simulations at different concentrations of the surfactant, Thesit (C12E8), at two pH values. Residues which bind to the monomeric detergent are found to be the same as the ones which have been reported earlier to bind to the substrate. Very importantly, a pH-induced rotation of the enzyme with respect to surfactant aggregate has been observed which not only explains the experimentally observed pH-dependent enzymatic activity of this lidless lipase, but also suggests its reorientation at an aqueous-lipodophilic interface.
脂肪酶在催化甘油三酯底物水解的过程中表现出一种独特的称为界面激活的过程。表面活性剂被用作与水的共溶剂,不仅为需要界面激活的脂肪酶提供了一个非极性环境,而且还溶解了在水中溶解度差的底物。然而,介质中去污剂的存在会同时影响脂肪酶和底物,使得在去污剂存在的情况下构建脂肪酶活性的微观动力学模型变得困难。在此,我们使用不同浓度的表面活性剂 Thesit(C12E8)在两种 pH 值下,对无盖脂肪酶 LipA 进行了广泛的原子分子动力学模拟,以研究其界面激活。与单体去污剂结合的残基与先前报道的与底物结合的残基相同。非常重要的是,我们观察到了酶相对于表面活性剂聚集体的 pH 诱导旋转,这不仅解释了这种无盖脂肪酶实验观察到的 pH 依赖性酶活性,而且还表明其在水脂界面的重新取向。