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用于模拟化学和生物体系中过氧化氢的简单加和势能模型。

A Simple Additive Potential Model for Simulating Hydrogen Peroxide in Chemical and Biological Systems.

机构信息

Center for Research in Molecular Modeling (CERMM), Quebec Network for Research on Protein Function, Engineering, and Applications (PROTEO), and Department of Chemistry and Biochemistry , Concordia University , 7141 Sherbrooke Street West , Montréal , Québec H4B 1R6 , Canada.

出版信息

J Chem Theory Comput. 2018 May 8;14(5):2808-2821. doi: 10.1021/acs.jctc.8b00246. Epub 2018 Apr 23.

Abstract

Hydrogen peroxide (HO) has numerous industrial, environmental, medical, cosmetic, and biological applications. Given its importance, we provide a simple model as an alternative to experiment for studying the properties of pure liquid HO and its concentrated aqueous solutions, which are hazardous, and for understanding the biological roles of HO at the molecular level. A four-site additive model is calibrated for HO based on the ab initio and experimental properties of the gaseous monomer and the density and heat of vaporization of liquid HO at 0 °C. Our model together with the TIP3P water model reproduce the ab initio binding energies of (HO) , HO· nHO, and nHO·HO clusters ( m = 2, 3 and n = 1, 2) calculated at the MP2 level using the 6-311++G(d,p) or the 6-311++G(3df,3pd) basis set. It yields structure, the self-diffusion coefficient, heat capacity, and densities at temperatures up to 200 °C of the pure liquid in good agreement with experiment. The model correctly predicts the hydration free energy of HO and reproduces the experimental density of aqueous HO solutions at 0-96 °C. Investigation of the solvation of HO and HO in aqueous HO solutions reveals that, as in the gas phase, HO is a better H-bond donor but poorer acceptor than HO and the bonding stability follows the order O-H···O > O-H···O ≥ O-H···O > O-H···O. Stronger H-bonding in HO/HO mixtures than in the pure liquids is consistent with exothermic heats of mixing and explains why the observed density and vapor pressure of the aqueous solutions are higher and lower, respectively, than expected from ideal mixing. Results also show that HO adopts a skewed equilibrium geometry in gas and liquid phases but more polar cis and nonpolar trans conformations also are accessible and will stabilize HO in environments of different polarity. In sum, our simple model presents a reliable tool for simulating HO in chemistry and biology.

摘要

过氧化氢(HO)在工业、环境、医学、美容和生物学等领域具有广泛的应用。鉴于其重要性,我们提供了一个简单的模型,作为研究纯液态 HO 及其浓缩水溶液性质的替代实验方法,这些溶液具有危害性,并用于在分子水平上理解 HO 的生物学作用。该模型基于气态单体的从头算和实验性质以及 0°C 下液态 HO 的密度和蒸发热,对 HO 进行了四站点加性模型校准。我们的模型与 TIP3P 水模型一起,再现了从头算计算得到的(HO)、HO·nHO 和 nHO·HO 团簇(m=2、3 和 n=1、2)的结合能,使用 MP2 水平上的 6-311++G(d,p)或 6-311++G(3df,3pd)基组。它生成了结构、自扩散系数、热容和高达 200°C 的纯液体密度,与实验结果吻合良好。该模型正确预测了 HO 的水合自由能,并再现了 0-96°C 下 HO 水溶液的实验密度。HO 和 HO 在 HO 水溶液中的溶剂化研究表明,与气相一样,HO 是更好的 H 键供体,但比 HO 更差的 H 键受体,键合稳定性遵循 O-H···O>O-H···O≥O-H···O>O-H···O 的顺序。HO/HO 混合物中的氢键比纯液体中更强,这与混合的放热焓一致,并解释了为什么观察到的水溶液的密度和蒸气压分别高于和低于理想混合的预期值。结果还表明,HO 在气相和液相中采用倾斜的平衡几何形状,但也可获得更极性的顺式和非极性的反式构象,并且将在不同极性的环境中稳定 HO。总之,我们的简单模型为模拟化学和生物学中的 HO 提供了可靠的工具。

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