Asojo Oluwatoyin A, Subramanian Sandhya, Abendroth Jan, Exley Ilyssa, Lorimer Donald D, Edwards Thomas E, Myler Peter J
National School of Tropical Medicine, Baylor College of Medicine, 1102 Bates Avenue Suite 550, Mail Stop BCM320, Houston, TX 77030-3411, USA.
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, Washington, USA.
Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):187-192. doi: 10.1107/S2053230X18002868. Epub 2018 Mar 22.
The bacterium Burkholderia phymatum is a promiscuous symbiotic nitrogen-fixating bacterium that belongs to one of the largest groups of Betaproteobacteria. Other Burkholderia species are known to cause disease in plants and animals, and some are potential agents for biological warfare. Structural genomics efforts include characterizing the structures of enzymes from pathways that can be targeted for drug development. As part of these efforts, chorismate mutase from B. phymatum was produced and crystallized, and a 1.95 Å resolution structure is reported. This enzyme shares less than 33% sequence identity with other homologs of known structure. There are two classes of chorismate mutase: AroQ and AroH. The bacterial subclass AroQγ has reported roles in virulence. Chorismate mutase from B. phymatum has the prototypical AroQγ topology and retains the characteristic chorismate mutase active site. This suggests that substrate-based chorismate mutase inhibitors will not be specific and are likely to affect beneficial bacteria such as B. phymatum.
费氏伯克霍尔德菌是一种共生性很强的固氮细菌,属于β-变形菌纲中最大的类群之一。已知其他伯克霍尔德菌属物种可导致动植物患病,有些还是生物战的潜在病原体。结构基因组学研究工作包括对可作为药物开发靶点的代谢途径中的酶结构进行表征。作为这些工作的一部分,制备并结晶了费氏伯克霍尔德菌的分支酸变位酶,并报道了其分辨率为1.95 Å的结构。该酶与其他已知结构的同源物的序列同一性不到33%。分支酸变位酶有两类:AroQ和AroH。细菌亚类AroQγ在毒力方面有相关报道。费氏伯克霍尔德菌的分支酸变位酶具有典型的AroQγ拓扑结构,并保留了分支酸变位酶的特征性活性位点。这表明基于底物的分支酸变位酶抑制剂不会具有特异性,很可能会影响诸如费氏伯克霍尔德菌这样的有益细菌。