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miRNA工具:利用miRNA知识网络进行高级培训。

miRNAtools: Advanced Training Using the miRNA Web of Knowledge.

作者信息

Stępień Ewa Ł, Costa Marina C, Enguita Francisco J

机构信息

Department of Medical Physics, Marian Smoluchowski Institute of Physics, Jagiellonian University, 30-348 Kraków, Poland.

Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Professor Egas Moniz, 1649-028 Lisbon, Portugal.

出版信息

Noncoding RNA. 2018 Feb 16;4(1):5. doi: 10.3390/ncrna4010005.

Abstract

Micro-RNAs (miRNAs) are small non-coding RNAs that act as negative regulators of the genomic output. Their intrinsic importance within cell biology and human disease is well known. Their mechanism of action based on the base pairing binding to their cognate targets have helped the development not only of many computer applications for the prediction of miRNA target recognition but also of specific applications for functional assessment and analysis. Learning about miRNA function requires practical training in the use of specific computer and web-based applications that are complementary to wet-lab studies. In order to guide the learning process about miRNAs, we have created miRNAtools (http://mirnatools.eu), a web repository of miRNA tools and tutorials. This article compiles tools with which miRNAs and their regulatory action can be analyzed and that function to collect and organize information dispersed on the web. The miRNAtools website contains a collection of tutorials that can be used by students and tutors engaged in advanced training courses. The tutorials engage in analyses of the functions of selected miRNAs, starting with their nomenclature and genomic localization and finishing with their involvement in specific cellular functions.

摘要

微小RNA(miRNA)是一类小型非编码RNA,作为基因组输出的负调控因子发挥作用。它们在细胞生物学和人类疾病中的内在重要性是众所周知的。基于与同源靶标碱基配对的作用机制,不仅推动了许多用于预测miRNA靶标识别的计算机应用程序的开发,还促进了功能评估和分析的特定应用的发展。了解miRNA功能需要在使用与湿实验室研究互补的特定计算机和基于网络的应用程序方面进行实践培训。为了指导关于miRNA的学习过程,我们创建了miRNAtools(http://mirnatools.eu),这是一个miRNA工具和教程的网络存储库。本文汇编了可用于分析miRNA及其调控作用以及收集和整理分散在网络上的信息的工具。miRNAtools网站包含一系列教程,可供参与高级培训课程的学生和教师使用。这些教程从所选miRNA的命名和基因组定位开始,到它们参与特定细胞功能结束,对其功能进行分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c64/5890392/57e608ef3b81/ncrna-04-00005-g001.jpg

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