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基质辅助激光解吸电离飞行时间质谱技术在弯曲菌属弯曲菌种分型中的应用及其与多位点序列分型和脉冲场凝胶电泳型别的比较。

Application of MALDI-TOF MS for the subtyping of Arcobacter butzleri strains and comparison with their MLST and PFGE types.

机构信息

Department of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, Italy.

Applied Maths NV, Sint-Martens-Latem, Belgium.

出版信息

Int J Food Microbiol. 2018 Jul 20;277:50-57. doi: 10.1016/j.ijfoodmicro.2018.04.026. Epub 2018 Apr 16.

Abstract

For the first time, this study evaluated the use of MALDI-TOF as a typing tool for Arcobacter butzleri. A total of 104 A. butzleri strains isolated from different sources in an artisanal dairy plant in Italy were identified and typed using MALDI-TOF and compared with their multilocus sequence typing (MLST) and pulsed field gel electrophoresis (PFGE) profiles found in previous studies. MALDI-TOF correctly identified all the isolates to species level. No clearly delineated clusters appeared on dendrograms based on either the complete spectra or the significant peaks, but nine clusters were defined using the cophenetic correlation. Interestingly, MALDI-TOF proved able to discriminate A. butzleri strains below species level, confirming its potential use for epidemiological surveys. As expected, the comparative analysis with PFGE and MLST showed that the discriminatory index was lower for MALDI-TOF but roughly comparable to sequence types and pulsotypes. MALDI-TOF appears to be a relatively low cost answer to the urgent need for more rapid, less expensive typing tools suitable for source attribution studies, readily allowing multiple typing methods to be combined. This study provides insights into MALDI-TOF as potential epidemiological tool. Its application in healthcare surveillance systems awaits further exploration to encourage interaction and convergence studies between primary care in humans and animal and food veterinary authorities as part of the One Health concept.

摘要

本研究首次评估了 MALDI-TOF 作为弯曲杆菌属鉴定工具的应用。从意大利一家手工奶制品厂不同来源分离的 104 株弯曲杆菌属菌株,使用 MALDI-TOF 进行鉴定和分型,并与之前研究中发现的多位点序列分型(MLST)和脉冲场凝胶电泳(PFGE)图谱进行比较。MALDI-TOF 可准确地将所有分离株鉴定到种水平。基于完整图谱或显著峰的聚类树状图上未出现明显的聚类,但使用协方差相关系数定义了 9 个聚类。有趣的是,MALDI-TOF 能够区分种以下水平的弯曲杆菌属菌株,证实了其在流行病学调查中的潜在用途。正如预期的那样,与 PFGE 和 MLST 的比较分析表明,MALDI-TOF 的鉴别指数较低,但与序列类型和脉冲类型大致相当。MALDI-TOF 似乎是一种相对低成本的解决方案,满足了对更快速、更经济的适合源归因研究的分型工具的迫切需求,并且可以轻松地将多种分型方法结合起来。本研究为 MALDI-TOF 作为潜在的流行病学工具提供了见解。它在医疗保健监测系统中的应用有待进一步探索,以鼓励人类初级保健与动物和食品兽医当局之间的互动和融合研究,作为“同一健康”概念的一部分。

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