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利用ISSR标记评估唐菖蒲(园艺品种)的遗传多样性和种群结构。

Assessment of genetic diversity and population structure in gladiolus ( Hort.) by ISSR markers.

作者信息

Chaudhary Veena, Kumar Mukesh, Sharma Shailendra, Kumar Navneet, Kumar Vipin, Yadav Hemant Kumar, Sharma Shiveta, Sirohi Ujjwal

机构信息

CSSS (PG) College, Machhra, Meerut, UP India.

2Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, UP India.

出版信息

Physiol Mol Biol Plants. 2018 May;24(3):493-501. doi: 10.1007/s12298-018-0519-2. Epub 2018 Apr 7.

Abstract

ISSR (Inter simple sequence repeat) markers were used to assess the genetic diversity and population structure in 53 indigenous and exotic genotypes of gladiolus ( Hort.). Molecular markers analysis showed PIC ranges from 0.42 (ISSR 861) to 0.99 (ISSR 855, ISSR 856 and ISSR 889) with an average 0.812, marker index ranged from 0.99 (ISSR 889) to 9.26 (ISSR 851) with an average 4.66 and resolving power of the primers ranged from 0.03 (ISSR 889) to 11.58 (ISSR 861) with an average value 3.80. The dendrogram based UPGMA clustering showed that all the 53 genotypes grouped into three main clusters. Nei's gene diversity (Na) varied from 0.929 to 1.717, effective number of alleles (Ne) varied from 1.262 to 1.369, Shannon's information index (I) ranged from 0.251 to 0.359 and gene diversity (He) was in the range from 0.167 to 0.229. Population structure analysis revealed three groups in which 32 genotypes were admixture types.

摘要

利用简单序列重复区间(ISSR)标记评估了53种唐菖蒲(园艺品种)本地和外来基因型的遗传多样性及群体结构。分子标记分析表明,多态信息含量(PIC)范围为0.42(ISSR 861)至0.99(ISSR 855、ISSR 856和ISSR 889),平均为0.812;标记指数范围为0.99(ISSR 889)至9.26(ISSR 851),平均为4.66;引物的分辨能力范围为0.03(ISSR 889)至11.58(ISSR 861),平均值为3.80。基于非加权组平均法(UPGMA)聚类的树形图显示,所有53个基因型分为三个主要类群。内氏基因多样性(Na)在0.929至1.717之间变化,有效等位基因数(Ne)在1.262至1.369之间变化,香农信息指数(I)范围为0.251至0.359,基因多样性(He)在0.167至0.229之间。群体结构分析揭示出三个类群,其中32个基因型为混合类型。

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