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针对心肌病的 NGS 检测:添加 RASopathy 相关基因的效用。

NGS testing for cardiomyopathy: Utility of adding RASopathy-associated genes.

机构信息

Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine, Cambridge, Massachusetts.

Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.

出版信息

Hum Mutat. 2018 Jul;39(7):954-958. doi: 10.1002/humu.23535. Epub 2018 May 16.

Abstract

RASopathies include a group of syndromes caused by pathogenic germline variants in RAS-MAPK pathway genes and typically present with facial dysmorphology, cardiovascular disease, and musculoskeletal anomalies. Recently, variants in RASopathy-associated genes have been reported in individuals with apparently nonsyndromic cardiomyopathy, suggesting that subtle features may be overlooked. To determine the utility and burden of adding RASopathy-associated genes to cardiomyopathy panels, we tested 11 RASopathy-associated genes by next-generation sequencing (NGS), including NGS-based copy number variant assessment, in 1,111 individuals referred for genetic testing for hypertrophic cardiomyopathy (HCM) or dilated cardiomyopathy (DCM). Disease-causing variants were identified in 0.6% (four of 692) of individuals with HCM, including three missense variants in the PTPN11, SOS1, and BRAF genes. Overall, 36 variants of uncertain significance (VUSs) were identified, averaging ∼3VUSs/100 cases. This study demonstrates that adding a subset of the RASopathy-associated genes to cardiomyopathy panels will increase clinical diagnoses without significantly increasing the number of VUSs/case.

摘要

RAS 病包括一组由 RAS-MAPK 通路基因的种系致病性变异引起的综合征,通常表现为面部畸形、心血管疾病和骨骼肌肉异常。最近,在表现为明显非综合征性扩张型心肌病的个体中也报道了 RAS 病相关基因的变异,提示可能存在被忽视的细微特征。为了确定将 RAS 病相关基因添加到心肌病面板中的效用和负担,我们通过下一代测序(NGS)对 11 个 RAS 病相关基因进行了检测,包括基于 NGS 的拷贝数变异评估,对 1111 名因肥厚型心肌病(HCM)或扩张型心肌病(DCM)而接受遗传检测的个体进行了检测。在 692 名 HCM 患者中,有 0.6%(4 名)发现了致病变异,包括 PTPN11、SOS1 和 BRAF 基因中的三个错义变异。总体而言,鉴定出了 36 个意义未明的变异(VUS),平均每 100 例中有 3 个 VUS。这项研究表明,将一组 RAS 病相关基因添加到心肌病面板中,在不显著增加每个病例 VUS 数量的情况下,将增加临床诊断。

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