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埋葬虫(鞘翅目:埋葬虫科)跨发育阶段转录组的组装及关键免疫转录本的鉴定

Assembly of the Burying Beetle (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts.

作者信息

Won Harim I, Schulze Thomas T, Clement Emalie J, Watson Gabrielle F, Watson Sean M, Warner Rosalie C, Ramler Elizabeth A M, Witte Elias J, Schoenbeck Mark A, Rauter Claudia M, Davis Paul H

机构信息

Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska.

出版信息

J Genomics. 2018 Apr 10;6:41-52. doi: 10.7150/jgen.24228. eCollection 2018.

Abstract

Burying beetles ( spp.) are among the relatively few insects that provide parental care while not belonging to the eusocial insects such as ants or bees. This behavior incurs energy costs as evidenced by immune deficits and shorter life-spans in reproducing beetles. In the absence of an assembled transcriptome, relatively little is known concerning the molecular biology of these beetles. This work details the assembly and analysis of the transcriptome at multiple developmental stages. RNA-Seq reads were obtained by next-generation sequencing and the transcriptome was assembled using the Trinity assembler. Validation of the assembly was performed by functional characterization using Gene Ontology (GO), Eukaryotic Orthologous Groups (KOG), and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. Differential expression analysis highlights developmental stage-specific expression patterns, and immunity-related transcripts are discussed. The data presented provides a valuable molecular resource to aid further investigation into immunocompetence throughout this organism's sexual development.

摘要

埋葬虫(葬甲属)是相对较少的既不属于蚂蚁或蜜蜂等群居昆虫却又能提供亲代抚育的昆虫之一。这种行为会产生能量成本,这在繁殖期甲虫的免疫缺陷和较短寿命中得到了证明。在没有完整转录组的情况下,人们对这些甲虫的分子生物学了解相对较少。这项工作详细介绍了埋葬虫多个发育阶段转录组的组装和分析。通过下一代测序获得RNA测序读数,并使用Trinity组装器对转录组进行组装。通过使用基因本体论(GO)、真核直系同源组(KOG)和京都基因与基因组百科全书(KEGG)分析进行功能表征来验证组装结果。差异表达分析突出了发育阶段特异性表达模式,并对免疫相关转录本进行了讨论。所呈现的数据提供了有价值的分子资源,有助于进一步研究该生物体整个性发育过程中的免疫能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f9b/5916875/49bab78a879d/jgenv06p0041g001.jpg

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