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局部涨落产生的集体变量。

Collective Variables from Local Fluctuations.

作者信息

Mendels Dan, Piccini GiovanniMaria, Parrinello Michele

机构信息

Department of Chemistry and Applied Biosciences , ETH Zurich, c/o USI Campus , Via Giuseppe Buffi 13 , CH-6900 Lugano , Ticino , Switzerland.

Facoltá di Informatica, Istituto di Scienze Computazionali , Universitá della Svizzera italiana (USI) , Via Giuseppe Buffi 13 , CH-6900 Lugano , Ticino , Switzerland.

出版信息

J Phys Chem Lett. 2018 Jun 7;9(11):2776-2781. doi: 10.1021/acs.jpclett.8b00733. Epub 2018 May 11.

Abstract

We introduce a method to obtain one-dimensional collective variables for studying rarely occurring transitions between two metastable states separated by a high free energy barrier. No previous information, not even approximated, on the path followed during the transition is needed. The only requirement is to know the fluctuations of the system while in the two metastable states. With this information in hand, we build the collective variable using a modified version of Fisher's linear discriminant analysis. The usefulness of this approach is tested on the metadynamics simulation of two representative systems. The first is the freezing of silver iodide into the superionic α-phase, and the second is the study of a classical Diels-Alder reaction. The collective variable works very well in these two diverse cases.

摘要

我们介绍了一种获取一维集体变量的方法,用于研究由高自由能垒分隔的两个亚稳态之间罕见的跃迁。无需关于跃迁过程中所遵循路径的先前信息,甚至近似信息也不需要。唯一的要求是了解系统在两个亚稳态时的涨落情况。有了这些信息,我们使用费舍尔线性判别分析的改进版本构建集体变量。该方法的有效性在两个代表性系统的元动力学模拟中得到了检验。第一个是碘化银冻结成超离子α相,第二个是对经典狄尔斯-阿尔德反应的研究。在这两种不同的情况下,集体变量都表现得非常出色。

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