Oh Kwang-Im, Baiz Carlos R
Department of Chemistry , University of Texas at Austin , 105 E 24th St. Stop A5300 , Austin , TX 78712 , United States.
J Phys Chem B. 2018 Jun 7;122(22):5984-5990. doi: 10.1021/acs.jpcb.8b02739. Epub 2018 May 21.
Up to 40% of intracellular water is confined due to the dense packing of macromolecules, ions, and osmolytes. Despite the large body of work concerning the effect of additives on the biomolecular structure and stability, the role of crowding and heterogeneity in these interactions is not well understood. Here, infrared spectroscopy and molecular dynamics simulations are used to describe the mechanisms by which crowding modulates hydrogen bonding interactions between water and dimethyl sulfoxide (DMSO). Specifically, we use formamide and dimethylformamide (DMF) as molecular crowders and show that the S═O hydrogen bond populations in aqueous mixtures are increased by both amides. These additives increase the amount of water within the DMSO first solvation shell through two mechanisms: (a) directly stabilizing water-DMSO hydrogen bonds; (b) increasing water exposure by destabilizing DMSO-DMSO self-interactions. Further, we quantified the hydrogen bond enthalpies between the different components: DMSO-water (61 kJ/mol) > DMSO-formamide (32 kJ/mol) > water-water (23 kJ/mol) ≫ formamide-water (4.7 kJ/mol). Spectra of carbonyl stretching vibrations show that DMSO induces the dehydration of amides as a result of strong DMSO-water interactions, which has been suggested as the main mechanism of protein destabilization.
由于大分子、离子和渗透溶质的密集堆积,高达40%的细胞内水受到限制。尽管有大量关于添加剂对生物分子结构和稳定性影响的研究工作,但拥挤和异质性在这些相互作用中的作用仍未得到充分理解。在这里,红外光谱和分子动力学模拟被用来描述拥挤调节水和二甲基亚砜(DMSO)之间氢键相互作用的机制。具体来说,我们使用甲酰胺和二甲基甲酰胺(DMF)作为分子拥挤剂,并表明两种酰胺都增加了水性混合物中S═O氢键的数量。这些添加剂通过两种机制增加了DMSO第一溶剂化层内的水量:(a)直接稳定水-DMSO氢键;(b)通过破坏DMSO-DMSO自相互作用增加水的暴露。此外,我们量化了不同组分之间的氢键焓:DMSO-水(61 kJ/mol)> DMSO-甲酰胺(32 kJ/mol)> 水-水(23 kJ/mol)≫ 甲酰胺-水(4.7 kJ/mol)。羰基伸缩振动光谱表明,由于强烈的DMSO-水相互作用,DMSO诱导了酰胺的脱水,这被认为是蛋白质不稳定的主要机制。