Gowda G A Nagana
Northwest Metabolomics Research Center, Department of Anesthesiology and Pain Medicine, University of Washington, Seattle, WA 98109, USA.
Mitochondria and Metabolism Center, Department of Anesthesiology and Pain Medicine, University of Washington, Seattle, WA 98109, USA.
Metabolites. 2018 May 14;8(2):32. doi: 10.3390/metabo8020032.
Coenzymes of cellular redox reactions and cellular energy, as well as antioxidants mediate biochemical reactions fundamental to the functioning of all living cells. Conventional analysis methods lack the opportunity to evaluate these important redox and energy coenzymes and antioxidants in a single step. Major coenzymes include redox coenzymes: NAD⁺ (oxidized nicotinamide adenine dinucleotide), NADH (reduced nicotinamide adenine dinucleotide), NADP⁺ (oxidized nicotinamide adenine dinucleotide phosphate) and NADPH (reduced nicotinamide adenine dinucleotide phosphate); energy coenzymes: ATP (adenosine triphosphate), ADP (adenosine diphosphate) and AMP (adenosine monophosphate); and antioxidants: GSSG (oxidized glutathione) and GSH (reduced glutathione). We show here that a simple ¹H NMR experiment can measure these coenzymes and antioxidants in tissue and whole blood apart from a vast pool of other metabolites. In addition, focused on the goal of identification of coenzymes in subcellular fractions, we demonstrate analysis of coenzymes in the cytoplasm using breast cancer cells. Owing to their unstable nature, or low concentrations, most of the coenzymes either evade detection or lose their integrity when established sample preparation and analysis methods are used. To overcome this challenge, here we describe the development of new methods to detect these molecules without affecting the integrity of other metabolites. We used an array of 1D and 2D NMR methods, chemical shift databases, pH measurements and spiking with authentic compounds to establish the identity of peaks for the coenzymes and antioxidants in NMR spectra. Interestingly, while none of the coenzymes and antioxidants were detected in plasma, they were abundant in whole blood. Considering that the coenzymes and antioxidants represent a sensitive measure of human health and risk for numerous diseases, the presented NMR methods to measure them in one step potentially open new opportunities in the metabolomics field.
细胞氧化还原反应和细胞能量的辅酶以及抗氧化剂介导了所有活细胞功能所必需的生化反应。传统分析方法无法在一步中评估这些重要的氧化还原和能量辅酶以及抗氧化剂。主要辅酶包括氧化还原辅酶:NAD⁺(氧化型烟酰胺腺嘌呤二核苷酸)、NADH(还原型烟酰胺腺嘌呤二核苷酸)、NADP⁺(氧化型烟酰胺腺嘌呤二核苷酸磷酸)和NADPH(还原型烟酰胺腺嘌呤二核苷酸磷酸);能量辅酶:ATP(三磷酸腺苷)、ADP(二磷酸腺苷)和AMP(一磷酸腺苷);以及抗氧化剂:GSSG(氧化型谷胱甘肽)和GSH(还原型谷胱甘肽)。我们在此表明,一个简单的¹H NMR实验能够在组织和全血中测量这些辅酶和抗氧化剂,而无需考虑大量其他代谢物。此外,着眼于在亚细胞组分中鉴定辅酶的目标,我们展示了使用乳腺癌细胞对细胞质中的辅酶进行分析。由于其性质不稳定或浓度较低,当使用既定的样品制备和分析方法时,大多数辅酶要么无法被检测到,要么会失去其完整性。为了克服这一挑战,我们在此描述了用于检测这些分子而不影响其他代谢物完整性的新方法的开发。我们使用了一系列一维和二维NMR方法、化学位移数据库、pH测量以及加入 authentic 化合物来确定NMR光谱中辅酶和抗氧化剂峰的身份。有趣的是,虽然在血浆中未检测到任何辅酶和抗氧化剂,但它们在全血中含量丰富。鉴于辅酶和抗氧化剂是人类健康和多种疾病风险的敏感指标,所提出的一步测量它们的NMR方法可能为代谢组学领域带来新机遇。