Suppr超能文献

代谢组学中的定量 NMR 方法。

Quantitative NMR Methods in Metabolomics.

机构信息

Northwest Metabolomics Research Center, University of Washington, Seattle, WA, USA.

Mitochondria and Metabolism Center, Anesthesiology and Pain Medicine, University of Washington, Seattle, WA, USA.

出版信息

Handb Exp Pharmacol. 2023;277:143-164. doi: 10.1007/164_2022_612.

Abstract

Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two major analytical platforms in the field of metabolomics, the other being mass spectrometry (MS). NMR is less sensitive than MS and hence it detects a relatively small number of metabolites. However, NMR exhibits numerous unique characteristics including its high reproducibility and non-destructive nature, its ability to identify unknown metabolites definitively, and its capabilities to obtain absolute concentrations of all detected metabolites, sometimes even without an internal standard. These characteristics outweigh the relatively low sensitivity and resolution of NMR in metabolomics applications. Since biological mixtures are highly complex, increased demand for new methods to improve detection, better identify unknown metabolites, and provide more accurate quantitation continues unabated. Technological and methodological advances to date have helped to improve the resolution and sensitivity and detection of a larger number of metabolite signals. Efforts focused on measuring unknown metabolite signals have resulted in the identification and quantitation of an expanded pool of metabolites including labile metabolites such as cellular redox coenzymes, energy coenzymes, and antioxidants. This chapter describes quantitative NMR methods in metabolomics with an emphasis on recent methodological developments, while highlighting the benefits and challenges of NMR-based metabolomics.

摘要

核磁共振(NMR)光谱学是代谢组学领域的两个主要分析平台之一,另一个是质谱(MS)。NMR 的灵敏度不如 MS,因此它只能检测到相对较少的代谢物。然而,NMR 具有许多独特的特性,包括高重现性和非破坏性、能够明确识别未知代谢物,以及能够获得所有检测到的代谢物的绝对浓度,有时甚至无需内标。这些特性在代谢组学应用中弥补了 NMR 相对较低的灵敏度和分辨率的不足。由于生物混合物高度复杂,因此不断需要新的方法来提高检测能力、更好地识别未知代谢物并提供更准确的定量分析,这种需求有增无减。迄今为止,技术和方法学的进步有助于提高分辨率、灵敏度和检测更多代谢物信号的能力。专注于测量未知代谢物信号的努力已经导致了更多代谢物的鉴定和定量,包括易变代谢物,如细胞氧化还原辅酶、能量辅酶和抗氧化剂。本章重点介绍了代谢组学中的定量 NMR 方法,同时强调了基于 NMR 的代谢组学的优势和挑战。

相似文献

1
Quantitative NMR Methods in Metabolomics.
Handb Exp Pharmacol. 2023;277:143-164. doi: 10.1007/164_2022_612.
2
Can NMR solve some significant challenges in metabolomics?
J Magn Reson. 2015 Nov;260:144-60. doi: 10.1016/j.jmr.2015.07.014. Epub 2015 Aug 18.
4
NMR-Based Metabolomics.
Adv Exp Med Biol. 2021;1280:19-37. doi: 10.1007/978-3-030-51652-9_2.
5
Overview of NMR Spectroscopy-Based Metabolomics: Opportunities and Challenges.
Methods Mol Biol. 2019;2037:3-14. doi: 10.1007/978-1-4939-9690-2_1.
6
A new limit for blood metabolite analysis using H NMR spectroscopy.
J Magn Reson Open. 2022 Dec;12-13. doi: 10.1016/j.jmro.2022.100082. Epub 2022 Nov 15.
7
The emergence of proton nuclear magnetic resonance metabolomics in the cardiovascular arena as viewed from a clinical perspective.
Atherosclerosis. 2014 Nov;237(1):287-300. doi: 10.1016/j.atherosclerosis.2014.09.024. Epub 2014 Sep 30.
8
Expanding the limits of human blood metabolite quantitation using NMR spectroscopy.
Anal Chem. 2015 Jan 6;87(1):706-15. doi: 10.1021/ac503651e. Epub 2014 Dec 8.
9
NMR-Guided Mass Spectrometry for Absolute Quantitation of Human Blood Metabolites.
Anal Chem. 2018 Feb 6;90(3):2001-2009. doi: 10.1021/acs.analchem.7b04089. Epub 2018 Jan 9.
10
Two elephants in the room: new hybrid nuclear magnetic resonance and mass spectrometry approaches for metabolomics.
Curr Opin Clin Nutr Metab Care. 2015 Sep;18(5):471-7. doi: 10.1097/MCO.0000000000000206.

引用本文的文献

1
Nuclear Magnetic Resonance Based Metabolomics-A Rising Star in Traditional Chinese Medicine Research.
Pharmaceuticals (Basel). 2025 Aug 12;18(8):1186. doi: 10.3390/ph18081186.
3
Interactions of Polychlorinated Biphenyls and Their Metabolites with the Brain and Liver Transcriptome of Female Mice.
ACS Chem Neurosci. 2024 Nov 6;15(21):3991-4009. doi: 10.1021/acschemneuro.4c00367. Epub 2024 Oct 11.
4
Uncommon opsin's retinal isomer is involved in mammalian sperm thermotaxis.
Sci Rep. 2024 May 10;14(1):10699. doi: 10.1038/s41598-024-61488-3.
5
Monitoring live mitochondrial metabolism in real-time using NMR spectroscopy.
Magn Reson Chem. 2023 Dec;61(12):718-727. doi: 10.1002/mrc.5341. Epub 2023 Mar 23.

本文引用的文献

1
2
NMR: Unique Strengths That Enhance Modern Metabolomics Research.
Anal Chem. 2021 Jan 12;93(1):478-499. doi: 10.1021/acs.analchem.0c04414. Epub 2020 Nov 12.
4
Real-Time In-Organism NMR Metabolomics Reveals Different Roles of AMP-Activated Protein Kinase Catalytic Subunits.
Anal Chem. 2020 Jun 2;92(11):7382-7387. doi: 10.1021/acs.analchem.9b05670. Epub 2020 May 11.
5
Optimization of Synovial Fluid Collection and Processing for NMR Metabolomics and LC-MS/MS Proteomics.
J Proteome Res. 2020 Jul 2;19(7):2585-2597. doi: 10.1021/acs.jproteome.0c00035. Epub 2020 Apr 7.
6
A shift in glutamine nitrogen metabolism contributes to the malignant progression of cancer.
Nat Commun. 2020 Mar 17;11(1):1320. doi: 10.1038/s41467-020-15136-9.
7
Stable Isotope-Resolved Metabolomics by NMR.
Methods Mol Biol. 2019;2037:151-168. doi: 10.1007/978-1-4939-9690-2_9.
8
High-Resolution Magic Angle Spinning (HRMAS) NMR Methods in Metabolomics.
Methods Mol Biol. 2019;2037:49-67. doi: 10.1007/978-1-4939-9690-2_4.
9
Lipid Profiling Using H NMR Spectroscopy.
Methods Mol Biol. 2019;2037:35-47. doi: 10.1007/978-1-4939-9690-2_3.
10
Targeting tumor phenotypic plasticity and metabolic remodeling in adaptive cross-drug tolerance.
Sci Signal. 2019 Aug 20;12(595):eaas8779. doi: 10.1126/scisignal.aas8779.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验