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Fish Shellfish Immunol. 2017 Jan;60:380-390. doi: 10.1016/j.fsi.2016.12.004. Epub 2016 Dec 3.
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The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.通道鲶鱼基因组序列为硬骨鱼类鳞片形成的进化提供了线索。
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OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy.OrthoFinder:解决全基因组比较中的基本偏差可显著提高直系同源组推断准确性。
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High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.利用CRISPR/Cas9在斑马鱼中进行高通量基因靶向和表型分析。
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Repbase Update, a database of repetitive elements in eukaryotic genomes.Repbase Update,一个真核生物基因组中重复元件的数据库。
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CXC chemokines function as a rheostat for hepatocyte proliferation and liver regeneration.CXC趋化因子作为肝细胞增殖和肝脏再生的一种调节机制发挥作用。
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Chemokine signaling in development and disease.趋化因子信号传导在发育与疾病中的作用
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趋化因子 C-C 基元配体 33 是硬骨鱼触须发育的关键调节因子。

Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development.

机构信息

The Fish Molecular Genetics and Biotechnology Laboratory, Aquatic Genomics Unit, School of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Auburn, AL 36849.

Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637;

出版信息

Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5018-E5027. doi: 10.1073/pnas.1718603115. Epub 2018 May 14.

DOI:10.1073/pnas.1718603115
PMID:29760055
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5984497/
Abstract

Barbels are important sensory organs in teleosts, reptiles, and amphibians. The majority of ∼4,000 catfish species, such as the channel catfish (), possess abundant whisker-like barbels. However, barbel-less catfish, such as the bottlenose catfish (), do exist. Barbeled catfish and barbel-less catfish are ideal natural models for determination of the genomic basis for barbel development. In this work, we generated and annotated the genome sequences of the bottlenose catfish, conducted comparative and subtractive analyses using genome and transcriptome datasets, and identified differentially expressed genes during barbel regeneration. Here, we report that chemokine C-C motif ligand 33 (), as a key regulator of barbel development and regeneration. It is present in barbeled fish but absent in barbel-less fish. The genes are differentially expressed during barbel regeneration in a timing concordant with the timing of barbel regeneration. Knockout of genes in the zebrafish () resulted in various phenotypes, including complete loss of barbels, reduced barbel sizes, and curly barbels, suggesting that is a key regulator of barbel development. Expression analysis indicated that paralogs of the gene have both shared and specific expression patterns, most notably expressed highly in various parts of the head, such as the eye, brain, and mouth areas, supporting its role for barbel development.

摘要

触须是硬骨鱼、爬行动物和两栖动物的重要感觉器官。大约 4000 种鲶鱼物种,如斑点叉尾鮰(),拥有丰富的须状触须。然而,也存在无触须的鲶鱼,如宽吻鮠()。有触须的鲶鱼和无触须的鲶鱼是确定触须发育的基因组基础的理想天然模型。在这项工作中,我们生成并注释了宽吻鮠的基因组序列,利用基因组和转录组数据集进行了比较和消减分析,并鉴定了在触须再生过程中差异表达的基因。在这里,我们报告趋化因子 C-C 基元配体 33(),作为触须发育和再生的关键调节因子。它存在于有触须的鱼类中,但不存在于无触须的鱼类中。基因在触须再生过程中的表达与触须再生的时间一致。在斑马鱼()中敲除基因导致各种表型,包括触须完全缺失、触须尺寸减小和触须卷曲,表明是触须发育的关键调节因子。表达分析表明,基因的同源基因具有共同和特定的表达模式,最显著的是在头部的各个部位高度表达,如眼睛、大脑和口腔区域,支持其在触须发育中的作用。