The Fish Molecular Genetics and Biotechnology Laboratory, Aquatic Genomics Unit, School of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Auburn, AL 36849.
Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637;
Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5018-E5027. doi: 10.1073/pnas.1718603115. Epub 2018 May 14.
Barbels are important sensory organs in teleosts, reptiles, and amphibians. The majority of ∼4,000 catfish species, such as the channel catfish (), possess abundant whisker-like barbels. However, barbel-less catfish, such as the bottlenose catfish (), do exist. Barbeled catfish and barbel-less catfish are ideal natural models for determination of the genomic basis for barbel development. In this work, we generated and annotated the genome sequences of the bottlenose catfish, conducted comparative and subtractive analyses using genome and transcriptome datasets, and identified differentially expressed genes during barbel regeneration. Here, we report that chemokine C-C motif ligand 33 (), as a key regulator of barbel development and regeneration. It is present in barbeled fish but absent in barbel-less fish. The genes are differentially expressed during barbel regeneration in a timing concordant with the timing of barbel regeneration. Knockout of genes in the zebrafish () resulted in various phenotypes, including complete loss of barbels, reduced barbel sizes, and curly barbels, suggesting that is a key regulator of barbel development. Expression analysis indicated that paralogs of the gene have both shared and specific expression patterns, most notably expressed highly in various parts of the head, such as the eye, brain, and mouth areas, supporting its role for barbel development.
触须是硬骨鱼、爬行动物和两栖动物的重要感觉器官。大约 4000 种鲶鱼物种,如斑点叉尾鮰(),拥有丰富的须状触须。然而,也存在无触须的鲶鱼,如宽吻鮠()。有触须的鲶鱼和无触须的鲶鱼是确定触须发育的基因组基础的理想天然模型。在这项工作中,我们生成并注释了宽吻鮠的基因组序列,利用基因组和转录组数据集进行了比较和消减分析,并鉴定了在触须再生过程中差异表达的基因。在这里,我们报告趋化因子 C-C 基元配体 33(),作为触须发育和再生的关键调节因子。它存在于有触须的鱼类中,但不存在于无触须的鱼类中。基因在触须再生过程中的表达与触须再生的时间一致。在斑马鱼()中敲除基因导致各种表型,包括触须完全缺失、触须尺寸减小和触须卷曲,表明是触须发育的关键调节因子。表达分析表明,基因的同源基因具有共同和特定的表达模式,最显著的是在头部的各个部位高度表达,如眼睛、大脑和口腔区域,支持其在触须发育中的作用。