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DNA识别序列及其与蛋白质相互作用的核磁共振研究。噬菌体λ OR1操纵子、对称的乳糖操纵子及其与cro蛋白和乳糖阻遏物“头部”的特异性复合物。

NMR studies of DNA recognition sequences and their interaction with proteins. The phage lambda OR1 operator, a symmetric lac operator and their specific complexes with cro protein and lac repressor "headpiece".

作者信息

Buck F, Hahn K D, Brill W, Rüterjans H, Chernov B K, Skryabin K G, Kirpichnikov M P, Bayev A A

机构信息

Institut für Biophysikalische Chemie, Universität Frankfurt, FRG.

出版信息

J Biomol Struct Dyn. 1986 Apr;3(5):899-911. doi: 10.1080/07391102.1986.10508472.

DOI:10.1080/07391102.1986.10508472
PMID:2978732
Abstract

The phage lambda operator OR1 and a 18 base pair symmetric lac operator have been studied by high resolution NMR. The imino proton resonances and the resonances of the unexchangeable protons (except the 5' and 5" sugar proton resonances) have been assigned by one- and two-dimensional NOE techniques. The imino proton resonances of OR1 and the symmetric lac operator have been used to monitor changes induced in the operator structure by the formation of a specific complex with the phage lambda cro protein and with the lac repressor N-terminal DNA binding domain ("headpiece"). Two regions within the OR1 sequence could be identified, where changes in the imino proton resonance positions occur: The central part around base pairs CG 9 and 10 and the region around base pairs AT 5 and CG 5. The TA base pair 6 is the only position in the symmetric lac operator, where the complex formation with headpiece induces a change.

摘要

噬菌体λ操纵子OR1和一个18个碱基对的对称lac操纵子已通过高分辨率核磁共振进行了研究。亚氨基质子共振以及不可交换质子(除5'和5''糖质子共振外)的共振已通过一维和二维NOE技术进行了归属。OR1和对称lac操纵子的亚氨基质子共振已被用于监测与噬菌体λ cro蛋白和lac阻遏物N端DNA结合结构域(“头部”)形成特异性复合物时操纵子结构中诱导的变化。在OR1序列内可识别出两个区域,其中亚氨基质子共振位置发生变化:碱基对CG 9和10周围的中心部分以及碱基对AT 5和CG 5周围的区域。TA碱基对6是对称lac操纵子中唯一与头部形成复合物时诱导变化的位置。

相似文献

1
NMR studies of DNA recognition sequences and their interaction with proteins. The phage lambda OR1 operator, a symmetric lac operator and their specific complexes with cro protein and lac repressor "headpiece".DNA识别序列及其与蛋白质相互作用的核磁共振研究。噬菌体λ OR1操纵子、对称的乳糖操纵子及其与cro蛋白和乳糖阻遏物“头部”的特异性复合物。
J Biomol Struct Dyn. 1986 Apr;3(5):899-911. doi: 10.1080/07391102.1986.10508472.
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Specificity of the interaction between lambda cro repressor protein and operator DNA fragments.λ cro阻遏蛋白与操纵基因DNA片段之间相互作用的特异性
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Origin of the asymmetrical contact between lac repressor and lac operator DNA.乳糖阻遏蛋白与乳糖操纵基因DNA之间不对称接触的起源。
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J Biomol Struct Dyn. 1992 Aug;10(1):15-33. doi: 10.1080/07391102.1992.10508627.
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[1H-NMR study of the OR1 operon in bacteriophage lambda. I. Assignment of signals from imino protons and adenine C2 protons].
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Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution.λ-Cro与共有操纵基因结合的晶体结构,分辨率为3.0埃。
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1H NMR study of the interaction of bacteriophage lambda Cro protein with the OR3 operator. Evidence for a change of the conformation of the OR3 operator on binding.噬菌体λ Cro蛋白与OR3操纵基因相互作用的1H核磁共振研究。结合时OR3操纵基因构象变化的证据。
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Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics.通过核磁共振光谱法和受限分子动力学确定的乳糖阻遏蛋白头部片段与一个11碱基对半操纵基因复合物的结构
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Protein-DNA recognition.蛋白质-脱氧核糖核酸识别
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31P NMR spectra of an oligodeoxyribonucleotide duplex lac operator-repressor headpiece complex.
Biochemistry. 1990 Jul 17;29(28):6578-84. doi: 10.1021/bi00480a005.

引用本文的文献

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Nucleic Acids Res. 1987 Aug 11;15(15):6225-41. doi: 10.1093/nar/15.15.6225.
2
Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview.B型DNA寡聚物中不可交换质子的共振归属概述
Nucleic Acids Res. 1988 Jul 11;16(13):5713-26. doi: 10.1093/nar/16.13.5713.
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NMR study of the structural changes induced in the E. coli lac promoter by the specific binding of the CAP protein.
关于CAP蛋白特异性结合诱导大肠杆菌乳糖启动子结构变化的核磁共振研究。
Nucleic Acids Res. 1989 Jul 11;17(13):5097-105. doi: 10.1093/nar/17.13.5097.