Institute of Genetics, University at Cologne, Zülpicher Str. 47A, 50674, Cologne, Germany.
Present address: Center for Molecular Medicine Cologne (ZMMK), Robert-Koch-Str. 21, 50931, Cologne, Germany.
BMC Genomics. 2018 May 23;19(1):383. doi: 10.1186/s12864-018-4740-8.
The sense of smell is unrivaled in terms of molecular complexity of its input channels. Even zebrafish, a model vertebrate system in many research fields including olfaction, possesses several hundred different olfactory receptor genes, organized in four different gene families. For one of these families, the initially discovered odorant receptors proper, segregation of expression into distinct spatial subdomains within a common sensory surface has been observed both in teleost fish and in mammals. However, for the remaining three families, little to nothing was known about their spatial coding logic. Here we wished to investigate, whether the principle of spatial segregation observed for odorant receptors extends to another olfactory receptor family, the V2R-related OlfC genes. Furthermore we thought to examine, how expression of OlfC genes is integrated into expression zones of odorant receptor genes, which in fish share a single sensory surface with OlfC genes.
To select representative genes, we performed a comprehensive phylogenetic study of the zebrafish OlfC family, which identified a novel OlfC gene, reduced the number of pseudogenes to 1, and brought the total family size to 60 intact OlfC receptors. We analyzed the spatial pattern of OlfC-expressing cells for seven representative receptors in three dimensions (height within the epithelial layer, horizontal distance from the center of the olfactory organ, and height within the olfactory organ). We report non-random distributions of labeled neurons for all OlfC genes analysed. Distributions for sparsely expressed OlfC genes are significantly different from each other in nearly all cases, broad overlap notwithstanding. For two of the three coordinates analyzed, OlfC expression zones are intercalated with those of odorant receptor zones, whereas in the third dimension some segregation is observed.
Our results show that V2R-related OlfC genes follow the same spatial logic of expression as odorant receptors and their expression zones intermingle with those of odorant receptor genes. Thus, distinctly different expression zones for individual receptor genes constitute a general feature shared by teleost and tetrapod V2R/OlfC and odorant receptor families alike.
嗅觉在输入通道的分子复杂性方面是无与伦比的。即使是斑马鱼,作为包括嗅觉在内的许多研究领域的模式脊椎动物系统,也拥有几百个不同的嗅觉受体基因,这些基因组织在四个不同的基因家族中。对于其中一个家族,即最初发现的气味受体基因,在硬骨鱼和哺乳动物中,已经观察到其表达在共同感觉表面的不同空间亚域中的分离。然而,对于其余三个家族,对于它们的空间编码逻辑几乎一无所知。在这里,我们希望研究在嗅觉受体中观察到的空间分离原则是否扩展到另一个嗅觉受体家族,即 V2R 相关的 OlfC 基因。此外,我们还想研究 OlfC 基因的表达如何整合到鱼类中与 OlfC 基因共享单一感觉表面的气味受体基因的表达区域中。
为了选择代表性基因,我们对斑马鱼 OlfC 家族进行了全面的系统发育研究,该研究确定了一个新的 OlfC 基因,将假基因的数量减少到 1 个,并将整个家族的大小增加到 60 个完整的 OlfC 受体。我们在三维(上皮层内的高度、离嗅器中心的水平距离和嗅器内的高度)上分析了七个代表性受体的 OlfC 表达细胞的空间模式。我们报告了所有分析的 OlfC 基因的标记神经元的非随机分布。尽管存在广泛的重叠,但在几乎所有情况下,稀疏表达的 OlfC 基因的分布彼此明显不同。在所分析的三个坐标中的两个坐标上,OlfC 表达区与气味受体区交错,而在第三个维度上则观察到一些分离。
我们的结果表明,V2R 相关的 OlfC 基因遵循与气味受体相同的空间表达逻辑,并且它们的表达区与气味受体基因的表达区交织在一起。因此,个体受体基因的明显不同的表达区构成了硬骨鱼和四足动物 V2R/OlfC 和气味受体家族共有的一般特征。