• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

采用 DFT 评估一些碘中心卤键和其他一些实验报道晶体结构中非共价相互作用的物理性质。

A DFT assessment of some physical properties of iodine-centered halogen bonding and other non-covalent interactions in some experimentally reported crystal geometries.

机构信息

Department of Chemical System Engineering, School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, 113-8656, Japan.

出版信息

Phys Chem Chem Phys. 2018 Jun 6;20(22):15316-15329. doi: 10.1039/c8cp01085d.

DOI:10.1039/c8cp01085d
PMID:29796486
Abstract

A set of six binary complexes that feature iodine-centered halogen bonding, extracted from structures deposited in the Cambridge Structure Database, has been examined computationally using density functional theory calculations with the M06-2X global hybrid, and dispersion corrected B3LYP-D3 and B97-D3, to determine their equilibrium geometries, binding energies and electronic properties. The results show that gas phase calculations are very informative in evaluating what occurs in the solid state, even though these calculations ignore the importance of lattice packing and counter ion effects. The calculated binding energies for the non-covalent interactions responsible for these complexes lie between -4.15 and -7.48 kcal mol-1 (M06-2X), which enables us to characterize them as weak-to-moderate in strength. The basis set superposition error energies are calculated to vary between 0.60 and 2.42 kcal mol-1 for all the complexes examined, even though an all-electron QZP basis set used in the analysis was of quadrupole-ζ (plus polarization) quality. Dispersion is found to have a profound effect on the binding energy of some of these complexes, and was estimated to be as large as 5.0 kcal mol-1. For one complex, the crystal geometry could not be precisely reproduced using a gas phase calculation. While both halogen- and hydrogen-bonding interactions were found competitive, they cooperate with each other to determine the stable configuration of the binary complex. The molecular electrostatic surface potential, quantum theory of atoms in molecules, and reduced density gradient non-covalent Interaction models were utilized to arrive at a fundamental understanding of the various inter- and intra-molecular molecular interactions involved, as well as some other previously-overlooked non-covalent interactions that emerge in the modelling.

摘要

从剑桥结构数据库中提取了一组包含碘中心卤键的六个二元配合物,并用密度泛函理论计算(包括 M06-2X 全局杂化、色散校正 B3LYP-D3 和 B97-D3)对其进行了计算研究,以确定其平衡几何形状、结合能和电子性质。结果表明,气相计算在评估固态中发生的情况时非常有启发性,即使这些计算忽略了晶格堆积和抗衡离子效应的重要性。这些复合物中负责非共价相互作用的计算结合能介于-4.15 和-7.48 kcal mol-1(M06-2X)之间,这使我们能够将其特征化为弱至中等强度。即使在分析中使用了全电子 QZP 基组,基组叠加误差能也被计算为所有被检查复合物的 0.60 到 2.42 kcal mol-1 之间变化。发现分散对某些复合物的结合能有深远的影响,估计高达 5.0 kcal mol-1。对于一个复合物,使用气相计算无法精确再现晶体几何形状。虽然卤键和氢键相互作用都具有竞争性,但它们相互配合确定了二元配合物的稳定构型。分子静电表面势能、原子在分子中的量子理论和简化密度梯度非共价相互作用模型被用来深入了解所涉及的各种分子间和分子内相互作用,以及在建模中出现的一些以前被忽视的非共价相互作用。

相似文献

1
A DFT assessment of some physical properties of iodine-centered halogen bonding and other non-covalent interactions in some experimentally reported crystal geometries.采用 DFT 评估一些碘中心卤键和其他一些实验报道晶体结构中非共价相互作用的物理性质。
Phys Chem Chem Phys. 2018 Jun 6;20(22):15316-15329. doi: 10.1039/c8cp01085d.
2
A geometrical correction for the inter- and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems.一种用于大分子体系 Hartree-Fock 和密度泛函理论计算中分子内和分子间基组叠加误差的几何修正方法。
J Chem Phys. 2012 Apr 21;136(15):154101. doi: 10.1063/1.3700154.
3
Parameterization of a B3LYP specific correction for non-covalent interactions and basis set superposition error on a gigantic dataset of CCSD(T) quality non-covalent interaction energies.针对一大组具有CCSD(T)质量的非共价相互作用能,对非共价相互作用和基组叠加误差进行B3LYP特定校正的参数化。
J Chem Theory Comput. 2011 Mar 8;7(3):658-668. doi: 10.1021/ct100651f.
4
Calculations on noncovalent interactions and databases of benchmark interaction energies.非共价相互作用的计算和基准相互作用能数据库。
Acc Chem Res. 2012 Apr 17;45(4):663-72. doi: 10.1021/ar200255p. Epub 2012 Jan 6.
5
Assessment of density functionals and paucity of non-covalent interactions in aminoylyne complexes of molybdenum and tungsten [(η(5)-C5H5)(CO)2M≡EN(SiMe3)(R)] (E = Si, Ge, Sn, Pb): a dispersion-corrected DFT study.钼和钨的氨基炔配合物[(η(5)-C5H5)(CO)2M≡EN(SiMe3)(R)](E = Si、Ge、Sn、Pb)中密度泛函的评估及非共价相互作用的缺乏:一项色散校正密度泛函理论研究
Dalton Trans. 2014 Jul 14;43(26):9955-67. doi: 10.1039/c3dt53632g.
6
Intricacies of Describing Weak Interactions Involving Halogen Atoms within Density Functional Theory.密度泛函理论中描述涉及卤素原子的弱相互作用的复杂性
J Chem Theory Comput. 2013 Feb 12;9(2):955-64. doi: 10.1021/ct3007524. Epub 2012 Dec 27.
7
Density-functional approaches to noncovalent interactions: a comparison of dispersion corrections (DFT-D), exchange-hole dipole moment (XDM) theory, and specialized functionals.密度泛函方法在非共价相互作用中的应用:色散修正(DFT-D)、交换空穴偶极矩(XDM)理论和专用泛函的比较。
J Chem Phys. 2011 Feb 28;134(8):084107. doi: 10.1063/1.3545971.
8
How do halogen bonds (S-O⋯I, N-O⋯I and C-O⋯I) and halogen-halogen contacts (C-I⋯I-C, C-F⋯F-C) subsist in crystal structures? A quantum chemical insight.卤素键(S-O⋯I、N-O⋯I和C-O⋯I)以及卤素-卤素相互作用(C-I⋯I-C、C-F⋯F-C)在晶体结构中是如何存在的?量子化学见解。
J Mol Model. 2017 Jan;23(1):16. doi: 10.1007/s00894-016-3181-z. Epub 2016 Dec 29.
9
Performance of conventional and dispersion-corrected density-functional theory methods for hydrogen bonding interaction energies.常规和分散校正密度泛函理论方法在氢键相互作用能中的性能。
Phys Chem Chem Phys. 2013 Aug 21;15(31):12821-8. doi: 10.1039/c3cp51559a.
10
Density functional theory including dispersion corrections for intermolecular interactions in a large benchmark set of biologically relevant molecules.包含用于生物相关分子大型基准集分子间相互作用色散校正的密度泛函理论。
Phys Chem Chem Phys. 2006 Dec 7;8(45):5287-93. doi: 10.1039/b612585a.

引用本文的文献

1
Preparation and Characterization of TCPP-CaMMT Nanocompound and Its Composite with Polypropylene.TCPP-CaMMT纳米复合物及其与聚丙烯复合材料的制备与表征
Nanomaterials (Basel). 2022 Apr 22;12(9):1428. doi: 10.3390/nano12091428.
2
Chalcogen Bonding in the Molecular Dimers of WCh (Ch = S, Se, Te): On the Basic Understanding of the Local Interfacial and Interlayer Bonding Environment in 2D Layered Tungsten Dichalcogenides.二硫化钨分子二聚体中的硫属键合(Ch = S、Se、Te):对二维层状二硫化钨中局部界面和层间键合环境的基本理解。
Int J Mol Sci. 2022 Jan 23;23(3):1263. doi: 10.3390/ijms23031263.
3
Significance of hydrogen bonding and other noncovalent interactions in determining octahedral tilting in the CHNHPbI hybrid organic-inorganic halide perovskite solar cell semiconductor.
氢键及其他非共价相互作用在确定CHNHPbI混合有机-无机卤化物钙钛矿太阳能电池半导体中八面体倾斜方面的意义。
Sci Rep. 2019 Jan 10;9(1):50. doi: 10.1038/s41598-018-36218-1.
4
Halogen-bonded cocrystallization with phosphorus, arsenic and antimony acceptors.卤素键合共结晶与磷、砷和锑受体。
Nat Commun. 2019 Jan 4;10(1):61. doi: 10.1038/s41467-018-07957-6.