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用于副溶血性弧菌分子分型的熔解曲线分析实时荧光定量PCR

A Real-Time PCR with Melting Curve Analysis for Molecular Typing of Vibrio parahaemolyticus.

作者信息

He Peiyan, Wang Henghui, Luo Jianyong, Yan Yong, Chen Zhongwen

机构信息

Jiaxing Center for Disease Control and Prevention, No. 486, Wen Qiao Road, Jiaxing, 314050, Zhejiang, China.

出版信息

Curr Microbiol. 2018 Sep;75(9):1206-1213. doi: 10.1007/s00284-018-1511-3. Epub 2018 May 23.

Abstract

Foodborne disease caused by Vibrio parahaemolyticus is a serious public health problem in many countries. Molecular typing has a great scientific significance and application value for epidemiological research of V. parahaemolyticus. In this study, a real-time PCR with melting curve analysis was established for molecular typing of V. parahaemolyticus. Eighteen large variably presented gene clusters (LVPCs) of V. parahaemolyticus which have different distributions in the genome of different strains were selected as targets. Primer pairs of 18 LVPCs were distributed into three tubes. To validate this newly developed assay, we tested 53 Vibrio parahaemolyticus strains, which were classified in 13 different types. Furthermore, cluster analysis using NTSYS PC 2.02 software could divide 53 V. parahaemolyticus strains into six clusters at a relative similarity coefficient of 0.85. This method is fast, simple, and conveniently for molecular typing of V. parahaemolyticus.

摘要

副溶血性弧菌引起的食源性疾病在许多国家都是严重的公共卫生问题。分子分型对于副溶血性弧菌的流行病学研究具有重大的科学意义和应用价值。在本研究中,建立了一种带有熔解曲线分析的实时PCR方法用于副溶血性弧菌的分子分型。选择了18个在不同菌株基因组中分布不同的副溶血性弧菌大可变呈现基因簇(LVPCs)作为靶点。18个LVPCs的引物对分布在三个管中。为验证这种新开发的检测方法,我们检测了53株副溶血性弧菌菌株,这些菌株被分为13种不同类型。此外,使用NTSYS PC 2.02软件进行聚类分析可以在相对相似系数为0.85时将53株副溶血性弧菌菌株分为六个簇。该方法快速、简单,便于副溶血性弧菌的分子分型。

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