Rugen Michael D, Rejzek Martin, Naested Henrik, Svensson Birte, Field Robert A
Department of Biological Chemistry, John Innes Centre, Norwich, UK.
Enzyme and Protein Chemistry, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby, Denmark.
Methods Mol Biol. 2018;1795:101-115. doi: 10.1007/978-1-4939-7874-8_9.
The hydrolysis of starch is a key step in plant germination, which also has relevance in the malting and brewing processes for beer and spirit production. Gaps in knowledge about this metabolic process exist that cannot easily be addressed using traditional genetic techniques, due to functional redundancy in many of the enzyme activities required for alpha-glucan metabolism in cereal crop species. Chemical inhibitors provide opportunities to probe the role of carbohydrate-active enzymes and the phenotypes associated with inhibition of specific enzymes. Iminosugars are the largest group of carbohydrate-active enzyme inhibitors and represent an underused resource for the dissection of plant carbohydrate metabolism. Herein we report a method for carrying out a reverse chemical genetic screen on α-glucosidase, the enzyme that catalyzes the final step in starch degradation during plant germination, namely the hydrolysis of maltose to release glucose. This chapter outlines the use of a high-throughput screen of small molecules for inhibition of α-glucosidase using a colorimetric assay which involves the substrate p-nitrophenyl α-D-glucopyranoside. Identified inhibitors can be further utilized in phenotypic screens to probe the roles played by amylolytic enzymes. Furthermore this 96-well plate-based method can be adapted to assay exo-glycosidase activities involved in other aspects of carbohydrate metabolism.
淀粉水解是植物萌发的关键步骤,这在啤酒和烈酒生产的麦芽制造和酿造过程中也具有重要意义。由于谷类作物物种中α-葡聚糖代谢所需的许多酶活性存在功能冗余,使用传统遗传技术难以解决有关这一代谢过程的知识空白。化学抑制剂为探究碳水化合物活性酶的作用以及与特定酶抑制相关的表型提供了机会。亚氨基糖是最大的一类碳水化合物活性酶抑制剂,是剖析植物碳水化合物代谢尚未充分利用的资源。在此,我们报告一种对α-葡萄糖苷酶进行反向化学遗传筛选的方法,该酶催化植物萌发过程中淀粉降解的最后一步,即将麦芽糖水解以释放葡萄糖。本章概述了使用比色法对小分子进行高通量筛选以抑制α-葡萄糖苷酶的方法,该比色法涉及底物对硝基苯基α-D-吡喃葡萄糖苷。鉴定出的抑制剂可进一步用于表型筛选,以探究淀粉分解酶所起的作用。此外,这种基于96孔板的方法可适用于检测碳水化合物代谢其他方面涉及的外切糖苷酶活性。