School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America.
Department of Biological Sciences, St. Edward's University, Austin, Texas, United States of America.
PLoS One. 2018 Jun 5;13(6):e0196878. doi: 10.1371/journal.pone.0196878. eCollection 2018.
Although bioinformatics is becoming increasingly central to research in the life sciences, bioinformatics skills and knowledge are not well integrated into undergraduate biology education. This curricular gap prevents biology students from harnessing the full potential of their education, limiting their career opportunities and slowing research innovation. To advance the integration of bioinformatics into life sciences education, a framework of core bioinformatics competencies is needed. To that end, we here report the results of a survey of biology faculty in the United States about teaching bioinformatics to undergraduate life scientists. Responses were received from 1,260 faculty representing institutions in all fifty states with a combined capacity to educate hundreds of thousands of students every year. Results indicate strong, widespread agreement that bioinformatics knowledge and skills are critical for undergraduate life scientists as well as considerable agreement about which skills are necessary. Perceptions of the importance of some skills varied with the respondent's degree of training, time since degree earned, and/or the Carnegie Classification of the respondent's institution. To assess which skills are currently being taught, we analyzed syllabi of courses with bioinformatics content submitted by survey respondents. Finally, we used the survey results, the analysis of the syllabi, and our collective research and teaching expertise to develop a set of bioinformatics core competencies for undergraduate biology students. These core competencies are intended to serve as a guide for institutions as they work to integrate bioinformatics into their life sciences curricula.
虽然生物信息学在生命科学研究中变得越来越重要,但生物信息学技能和知识并没有很好地融入本科生物学教育中。这种课程差距阻碍了生物学学生充分发挥他们教育的潜力,限制了他们的职业机会,并减缓了研究创新。为了推进生物信息学在生命科学教育中的融合,需要一个核心生物信息学能力框架。为此,我们在此报告了一项针对美国生物学教师教授本科生命科学家生物信息学的调查结果。来自全美 50 个州的 1260 名教师对该调查做出了回应,这些教师所在的机构每年的教育能力可达数十万人。结果表明,生物信息学知识和技能对本科生命科学家至关重要,这得到了广泛的认同,同时也广泛认同哪些技能是必要的。一些技能的重要性认知因受访者的培训程度、获得学位后的时间以及/或受访者所在机构的卡内基分类而有所不同。为了评估哪些技能正在被教授,我们分析了调查受访者提交的具有生物信息学内容的课程教学大纲。最后,我们利用调查结果、对教学大纲的分析以及我们的集体研究和教学专业知识,为本科生物学学生制定了一套生物信息学核心能力。这些核心能力旨在为各机构将生物信息学融入其生命科学课程提供指导。