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H3ABioNet,一个致力于非洲人类遗传与健康的可持续泛非生物信息学网络。

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa.

作者信息

Mulder Nicola J, Adebiyi Ezekiel, Alami Raouf, Benkahla Alia, Brandful James, Doumbia Seydou, Everett Dean, Fadlelmola Faisal M, Gaboun Fatima, Gaseitsiwe Simani, Ghazal Hassan, Hazelhurst Scott, Hide Winston, Ibrahimi Azeddine, Jaufeerally Fakim Yasmina, Jongeneel C Victor, Joubert Fourie, Kassim Samar, Kayondo Jonathan, Kumuthini Judit, Lyantagaye Sylvester, Makani Julie, Mansour Alzohairy Ahmed, Masiga Daniel, Moussa Ahmed, Nash Oyekanmi, Ouwe Missi Oukem-Boyer Odile, Owusu-Dabo Ellis, Panji Sumir, Patterton Hugh, Radouani Fouzia, Sadki Khalid, Seghrouchni Fouad, Tastan Bishop Özlem, Tiffin Nicki, Ulenga Nzovu

机构信息

Computational Biology Group, Department of Integrative Biomedical Sciences, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa 7925;

Covenant University Bioinformatics Research (CUBRe) and Department of Computer and Information Sciences, Covenant University, Ota, Ogun State, Nigeria, P.M.B. 1023;

出版信息

Genome Res. 2016 Feb;26(2):271-7. doi: 10.1101/gr.196295.115. Epub 2015 Dec 1.

Abstract

The application of genomics technologies to medicine and biomedical research is increasing in popularity, made possible by new high-throughput genotyping and sequencing technologies and improved data analysis capabilities. Some of the greatest genetic diversity among humans, animals, plants, and microbiota occurs in Africa, yet genomic research outputs from the continent are limited. The Human Heredity and Health in Africa (H3Africa) initiative was established to drive the development of genomic research for human health in Africa, and through recognition of the critical role of bioinformatics in this process, spurred the establishment of H3ABioNet, a pan-African bioinformatics network for H3Africa. The limitations in bioinformatics capacity on the continent have been a major contributory factor to the lack of notable outputs in high-throughput biology research. Although pockets of high-quality bioinformatics teams have existed previously, the majority of research institutions lack experienced faculty who can train and supervise bioinformatics students. H3ABioNet aims to address this dire need, specifically in the area of human genetics and genomics, but knock-on effects are ensuring this extends to other areas of bioinformatics. Here, we describe the emergence of genomics research and the development of bioinformatics in Africa through H3ABioNet.

摘要

随着新的高通量基因分型和测序技术以及数据分析能力的提升,基因组学技术在医学和生物医学研究中的应用越来越普遍。人类、动物、植物和微生物群中一些最大的遗传多样性存在于非洲,但该大陆的基因组研究成果却很有限。“非洲人类遗传与健康”(H3Africa)倡议旨在推动非洲人类健康基因组研究的发展,并通过认识到生物信息学在这一过程中的关键作用,促使建立了H3ABioNet,这是一个服务于H3Africa的泛非生物信息学网络。非洲大陆生物信息学能力的局限性一直是高通量生物学研究缺乏显著成果的一个主要因素。尽管此前已经存在一些高质量的生物信息学团队,但大多数研究机构缺乏能够培训和指导生物信息学专业学生的经验丰富的教师。H3ABioNet旨在满足这一迫切需求,特别是在人类遗传学和基因组学领域,但连锁反应确保了这一需求扩展到生物信息学的其他领域。在此,我们通过H3ABioNet描述非洲基因组学研究的兴起和生物信息学的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59d5/4728379/b328d1bc7089/271f01.jpg

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