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在心肌发生过程中受GATA4、5和6调控的基因的全基因组转录组学分析 。 你提供的原文似乎不完整,句末缺少具体内容。

Genome-wide transcriptomics analysis of genes regulated by GATA4, 5 and 6 during cardiomyogenesis in .

作者信息

Afouda Boni A, Lynch Adam T, de Paiva Alves Eduardo, Hoppler Stefan

机构信息

Institute of Medical Sciences, Foresterhill Health Campus, University of Aberdeen, Scotland, UK.

Centre for Genome-Enabled Biology and Medicine, King's College Campus, University of Aberdeen, Scotland, UK.

出版信息

Data Brief. 2018 Jan 17;17:559-563. doi: 10.1016/j.dib.2018.01.005. eCollection 2018 Apr.

DOI:10.1016/j.dib.2018.01.005
PMID:29876429
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5988223/
Abstract

The transcription factors GATA4, GATA5 and GATA6 play important roles in heart muscle differentiation. The data presented in this article are related to the research article entitled "Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis" (Afouda et al., 2017) [1]. The present study identifies genes regulated by these individual cardiogenic GATA factors using genome-wide transcriptomics analysis. We have presented genes that are specifically regulated by each of them, as well those regulated by either of them. The gene ontology terms (GO) associated with the genes differentially affected are also presented. The data set will allow further investigations on the gene regulatory network downstream of individual cardiogenic GATA factors during cardiac muscle formation.

摘要

转录因子GATA4、GATA5和GATA6在心肌分化过程中发挥着重要作用。本文所呈现的数据与题为《全基因组转录组学分析确定sox7和sox18在心肌发生过程中受gata4特异性调控》(阿福达等人,2017年)[1]的研究论文相关。本研究通过全基因组转录组学分析确定了受这些个体心脏发生GATA因子调控的基因。我们展示了分别受它们各自调控的基因,以及受它们其中之一调控的基因。还呈现了与差异受影响基因相关的基因本体术语(GO)。该数据集将有助于进一步研究个体心脏发生GATA因子下游在心肌形成过程中的基因调控网络。

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引用本文的文献

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本文引用的文献

1
Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis.全基因组转录组学分析确定sox7和sox18在心肌发生过程中受gata4特异性调控。
Dev Biol. 2018 Feb 1;434(1):108-120. doi: 10.1016/j.ydbio.2017.11.017. Epub 2017 Dec 8.
2
HISAT: a fast spliced aligner with low memory requirements.HISAT:一种内存需求低的快速剪接比对器。
Nat Methods. 2015 Apr;12(4):357-60. doi: 10.1038/nmeth.3317. Epub 2015 Mar 9.
3
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
使用DESeq2对RNA测序数据的倍数变化和离散度进行适度估计。
Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8.
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.featureCounts:一个用于将序列读取分配给基因组特征的高效通用程序。
Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13.
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Stem-cell-like embryonic explants to study cardiac development.用于研究心脏发育的类干细胞胚胎外植体。
Methods Mol Biol. 2012;917:515-23. doi: 10.1007/978-1-61779-992-1_29.
6
Different requirements for GATA factors in cardiogenesis are mediated by non-canonical Wnt signaling.GATA 因子在心脏发生中的不同需求是由非经典 Wnt 信号转导介导的。
Dev Dyn. 2011 Mar;240(3):649-62. doi: 10.1002/dvdy.22570. Epub 2011 Feb 8.
7
GATA transcription factors integrate Wnt signalling during heart development.GATA转录因子在心脏发育过程中整合Wnt信号通路。
Development. 2008 Oct;135(19):3185-90. doi: 10.1242/dev.026443. Epub 2008 Aug 20.
8
GATA4 and GATA5 are essential for heart and liver development in Xenopus embryos.GATA4和GATA5对非洲爪蟾胚胎的心脏和肝脏发育至关重要。
BMC Dev Biol. 2008 Jul 28;8:74. doi: 10.1186/1471-213X-8-74.
9
SOX7 and SOX18 are essential for cardiogenesis in Xenopus.SOX7和SOX18对非洲爪蟾的心脏发生至关重要。
Dev Dyn. 2005 Dec;234(4):878-91. doi: 10.1002/dvdy.20565.
10
GATA4, 5 and 6 mediate TGFbeta maintenance of endodermal gene expression in Xenopus embryos.GATA4、5和6介导非洲爪蟾胚胎中内胚层基因表达的转化生长因子β维持作用。
Development. 2005 Feb;132(4):763-74. doi: 10.1242/dev.01647. Epub 2005 Jan 19.