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1
CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.
Bioinformatics. 2018 Sep 15;34(18):3217-3219. doi: 10.1093/bioinformatics/bty316.
2
Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge.
Bioinformatics. 2018 Jul 1;34(13):i124-i132. doi: 10.1093/bioinformatics/bty293.
3
Random forest based similarity learning for single cell RNA sequencing data.
Bioinformatics. 2018 Jul 1;34(13):i79-i88. doi: 10.1093/bioinformatics/bty260.
4
Cell-level somatic mutation detection from single-cell RNA sequencing.
Bioinformatics. 2019 Nov 1;35(22):4679-4687. doi: 10.1093/bioinformatics/btz288.
5
A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications.
PLoS Comput Biol. 2019 Feb 19;15(2):e1006772. doi: 10.1371/journal.pcbi.1006772. eCollection 2019 Feb.
6
BASIC: BCR assembly from single cells.
Bioinformatics. 2017 Feb 1;33(3):425-427. doi: 10.1093/bioinformatics/btw631.
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ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data.
Bioinformatics. 2017 Oct 1;33(19):3123-3125. doi: 10.1093/bioinformatics/btx337.
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Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
Bioinformatics. 2017 Mar 1;33(5):767-769. doi: 10.1093/bioinformatics/btw732.

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NOTCH3 Drives Fatty Acid Oxidation and Ferroptosis Resistance in Aggressive Meningiomas.
Res Sq. 2025 Jun 4:rs.3.rs-6779386. doi: 10.21203/rs.3.rs-6779386/v1.

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Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma.
Nature. 2016 Nov 10;539(7628):309-313. doi: 10.1038/nature20123. Epub 2016 Nov 2.
5
SCell: integrated analysis of single-cell RNA-seq data.
Bioinformatics. 2016 Jul 15;32(14):2219-20. doi: 10.1093/bioinformatics/btw201. Epub 2016 Apr 19.
8
A survey of human brain transcriptome diversity at the single cell level.
Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7285-90. doi: 10.1073/pnas.1507125112. Epub 2015 May 18.
9
Bayesian approach to single-cell differential expression analysis.
Nat Methods. 2014 Jul;11(7):740-2. doi: 10.1038/nmeth.2967. Epub 2014 May 18.

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