Ahmed Zafarali, Gravel Simon
School of Computer Science, McGill University, Montréeal, QC, Canada.
Department of Human Genetics, McGill University, Montréeal, QC, Canada.
Mol Biol Evol. 2018 Sep;35(9):2135-2144. doi: 10.1093/molbev/msy115. Epub 2017 Jun 12.
Genetic diversity plays a central role in tumor progression, metastasis, and resistance to treatment. Experiments are shedding light on this diversity at ever finer scales, but interpretation is challenging. Using recent progress in numerical models, we simulate macroscopic tumors to investigate the interplay between growth dynamics, microscopic composition, and circulating tumor cell cluster diversity. We find that modest differences in growth parameters can profoundly change microscopic diversity. Simple outwards expansion leads to spatially segregated clones and low diversity, as expected. However, a modest cell turnover can result in an increased number of divisions and mixing among clones resulting in increased microscopic diversity in the tumor core. Using simulations to estimate power to detect such spatial trends, we find that multiregion sequencing data from contemporary studies is marginally powered to detect the predicted effects. Slightly larger samples, improved detection of rare variants, or sequencing of smaller biopsies or circulating tumor cell clusters would allow one to distinguish between leading models of tumor evolution. The genetic composition of circulating tumor cell clusters, which can be obtained from non-invasive blood draws, is therefore informative about tumor evolution and its metastatic potential.
基因多样性在肿瘤进展、转移和治疗耐药性中起着核心作用。实验正从越来越精细的尺度揭示这种多样性,但解读具有挑战性。利用数值模型的最新进展,我们模拟宏观肿瘤以研究生长动力学、微观组成和循环肿瘤细胞簇多样性之间的相互作用。我们发现生长参数的适度差异可深刻改变微观多样性。如预期的那样,简单的向外扩张会导致空间上隔离的克隆和低多样性。然而,适度的细胞更新可导致克隆之间分裂和混合的增加,从而导致肿瘤核心的微观多样性增加。通过模拟来估计检测此类空间趋势的能力,我们发现当代研究中的多区域测序数据勉强有能力检测到预测的效应。稍大的样本量、对罕见变异的更好检测,或对较小活检组织或循环肿瘤细胞簇进行测序,将使人们能够区分肿瘤进化的主要模型。因此,可从非侵入性血液检测中获得的循环肿瘤细胞簇的基因组成,对于肿瘤进化及其转移潜力具有参考价值。