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家蛛基因表达的全基因组规模胚胎发育图谱

Genome-scale embryonic developmental profile of gene expression in the common house spider .

作者信息

Iwasaki-Yokozawa Sawa, Akiyama-Oda Yasuko, Oda Hiroki

机构信息

Laboratory of Evolutionary Cell and Developmental Biology, JT Biohistory Research Hall, 1-1 Murasaki-cho, Takatsuki, Osaka 569-1125, Japan.

Microbiology and Infection Control, Osaka Medical College, Takatsuki, Osaka, Japan.

出版信息

Data Brief. 2018 May 24;19:865-867. doi: 10.1016/j.dib.2018.05.106. eCollection 2018 Aug.

DOI:10.1016/j.dib.2018.05.106
PMID:29900384
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5997937/
Abstract

We performed RNA sequencing (RNA-Seq) at ten successive developmental stages in embryos of the common house spider . Two independent datasets from two pairs of parents represent the normalized coverage of mapped RNA-Seq reads along scaffolds of the genome assembly. Transcript abundance was calculated against existing AUGUSTUS gene models. The datasets have been deposited in the Gene Expression Omnibus (GEO) Database at the National Center for Biotechnology Information (NCBI) under the accession number GSE112712.

摘要

我们对普通家蛛胚胎的十个连续发育阶段进行了RNA测序(RNA-Seq)。来自两对亲本的两个独立数据集代表了沿基因组组装支架映射的RNA-Seq读数的标准化覆盖率。根据现有的AUGUSTUS基因模型计算转录本丰度。这些数据集已存入美国国立生物技术信息中心(NCBI)的基因表达综合数据库(GEO),登录号为GSE112712。

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本文引用的文献

1
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.家蛛基因组揭示了蛛形动物进化过程中的一次古老的全基因组复制事件。
BMC Biol. 2017 Jul 31;15(1):62. doi: 10.1186/s12915-017-0399-x.
2
Embryonic development and staging of the cobweb spider Parasteatoda tepidariorum C. L. Koch, 1841 (syn.: Achaearanea tepidariorum; Araneomorphae; Theridiidae).蛛网蜘蛛 Parasteatoda tepidariorum C. L. Koch, 1841(同义词:Achaearanea tepidariorum;Araneomorphae;Theridiidae)的胚胎发育和分期。
Dev Genes Evol. 2012 Jul;222(4):189-216. doi: 10.1007/s00427-012-0401-0. Epub 2012 May 9.
3
Expression patterns of a twist-related gene in embryos of the spider Achaearanea tepidariorum reveal divergent aspects of mesoderm development in the fly and spider.一种与twist相关基因在温血球腹蛛胚胎中的表达模式揭示了果蝇和蜘蛛中胚层发育的不同方面。
Zoolog Sci. 2005 Feb;22(2):177-85. doi: 10.2108/zsj.22.177.
4
Early patterning of the spider embryo: a cluster of mesenchymal cells at the cumulus produces Dpp signals received by germ disc epithelial cells.蜘蛛胚胎的早期模式形成:卵丘处的一群间充质细胞产生由胚盘上皮细胞接收的Dpp信号。
Development. 2003 May;130(9):1735-47. doi: 10.1242/dev.00390.