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解析一种基于吡唑的生物活性探针与血清蛋白的结合相互作用:相对浓度依赖性 1:1 和 2:1 的探针-蛋白化学计量比。

Unraveling the binding interaction of a bioactive pyrazole-based probe with serum proteins: Relative concentration dependent 1:1 and 2:1 probe-protein stoichiometries.

机构信息

Department of Chemistry, Jadavpur University, Kolkata 700 032, India.

Department of Chemistry, Jadavpur University, Kolkata 700 032, India.

出版信息

Biophys Chem. 2018 Sep;240:70-81. doi: 10.1016/j.bpc.2018.06.001. Epub 2018 Jun 15.

DOI:10.1016/j.bpc.2018.06.001
PMID:29913331
Abstract

Molecular interactions and binding of probes/drugs with biomacromolecular systems are of fundamental importance in understanding the mechanism of action and hence designing of proactive drugs. In the present study, binding interactions of a biologically potent fluorophore, (E)-1,5-diphenyl-3-styryl-4,5-dihydro-1H-pyrazole (DSDP) with two serum transport proteins, human serum albumin and bovine serum albumin, have been investigated exploiting multi-spectroscopic techniques. The spectrophotometric and fluorometric studies together with fluorescence quenching, fluorescence anisotropy, urea induced denaturation studies and fluorescence lifetime measurements reveal strong binding of DSDP with both the plasma proteins. Going beyond the vast literature data mostly providing 1:1 probe-protein complexation, the present investigation portrays 2:1 probe-protein complex formation at higher relative probe concentration. A newer approach has been developed to have an estimate of the binding constants varying the concentration of the protein, instead of the usual practice of varying the probe. The binding constants for the 2:1 DSDP-protein complexes are determined to be 1.37 × 10 M and 1.47 × 10 M for HSA and BSA respectively, while those for the 1:1 complexation process come out to be 1.85 × 10 M and 1.73 × 10 M for DSDP-HSA and DSDP-BSA systems respectively. Thermodynamic analysis at different temperatures implies that the forces primarily involved in the binding process are hydrogen bonding and hydrophobic interactions. Competitive replacement studies with known site markers and molecular docking simulations direct to the possible locations and binding energies of DSDP with the two serum proteins, corroborating well with the experimental results.

摘要

分子间相互作用以及探针/药物与生物大分子系统的结合对于理解作用机制从而设计主动药物具有重要意义。在本研究中,利用多种光谱技术研究了一种具有生物活性的荧光团(E)-1,5-二苯基-3-苯乙烯基-4,5-二氢-1H-吡唑(DSDP)与两种血清转运蛋白,人血清白蛋白和牛血清白蛋白之间的结合相互作用。分光光度法和荧光法研究以及荧光猝灭、荧光各向异性、尿素诱导变性研究和荧光寿命测量表明,DSDP 与两种血浆蛋白具有很强的结合作用。本研究超越了提供 1:1 探针-蛋白络合的大量文献数据,描绘了在较高相对探针浓度下形成 2:1 探针-蛋白络合物。开发了一种新方法来估计结合常数,方法是改变蛋白质的浓度,而不是通常改变探针的浓度。对于 2:1 DSDP-蛋白复合物,确定的结合常数分别为 1.37×10 M 和 1.47×10 M,对于 HSA 和 BSA 分别为 1.85×10 M 和 1.73×10 M,对于 1:1 络合过程,分别为 DSDP-HSA 和 DSDP-BSA 系统。在不同温度下的热力学分析表明,结合过程中主要涉及氢键和疏水相互作用。与已知位点标记物的竞争性替换研究和分子对接模拟表明 DSDP 与两种血清蛋白的可能位置和结合能,与实验结果非常吻合。

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