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基于目标区域扩增多态性的铁皮石斛野生居群分子鉴定

[Molecular identification of wild populations of Dendrobium officinale based on target region amplification polymorphism].

作者信息

Liu Ling, Wu Rui, Niu Zhi-tao, Xue Qing-yun, Liu Wei, Ding Xiao-yu

出版信息

Yao Xue Xue Bao. 2016 Dec;51(12):1926-33.

Abstract

In this study, TRAP molecular markers were used in identification of wild populations and hybrids of Dendrobium officinale, based on the sequences of genes encoding phosphoenolpyruvate carboxylase (PEPC), UDP-glucose pyrophosphorylase (UGP) and phenylalanine ammonia-lyase (PAL). Seven polymorphic target region amplification polymorphism (TRAP) primers were selected from 54 primer combinations and used in the identification of wild populations. Moreover, hybrids had female polymorphic bands, male polymorphic bands and heterozygous bands, which suggest that seven TRAP markers are able to identify the hybrids from their parents. Furthermore, the UPGMA dendrogram revealed that when sample from Guangnan in Yunnan province was used as one parent, reciprocal hybrids grouped with them in first, and then grouped with the other parent. The results indicated that the hybrids were closer to D. officinale from Guangnan population. This study identified the wild populations and hybrids of D. officinale by TRAP molecular markers, which is useful in selection of good varieties for artificial cultivation and early identification of hybrids. The study provides a method in the control of stability of germplasm and quality of D. officinale.

摘要

本研究基于编码磷酸烯醇式丙酮酸羧化酶(PEPC)、尿苷二磷酸葡萄糖焦磷酸化酶(UGP)和苯丙氨酸解氨酶(PAL)的基因序列,采用靶标区域扩增多态性(TRAP)分子标记对铁皮石斛野生居群和杂交种进行鉴定。从54对引物组合中筛选出7对多态性TRAP引物用于野生居群鉴定。此外,杂交种具有雌性多态性条带、雄性多态性条带和杂合条带,这表明7个TRAP标记能够将杂交种与其亲本区分开来。此外,UPGMA聚类图显示,当以云南广南的样本作为一个亲本时,正反交杂种首先与其聚类,然后再与另一个亲本聚类。结果表明,杂交种与广南居群的铁皮石斛亲缘关系更近。本研究利用TRAP分子标记对铁皮石斛野生居群和杂交种进行了鉴定,这对于人工栽培优良品种的选育以及杂交种的早期鉴定具有重要意义。该研究为铁皮石斛种质稳定性和品质控制提供了一种方法。

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