Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
National High Magnetic Field Laboratory, Tallahassee, FL 32310, USA.
J Mol Biol. 2018 Sep 14;430(18 Pt B):3234-3250. doi: 10.1016/j.jmb.2018.06.015. Epub 2018 Jun 20.
Biliverdin reductase B (BLVRB) is a newly identified cellular redox regulator that catalyzes the NADPH-dependent reduction of multiple substrates. Through mass spectrometry analysis, we identified high levels of BLVRB in mature red blood cells, highlighting the importance of BLVRB in redox regulation. The BLVRB conformational changes that occur during conezyme/substrate binding and the role of dynamics in BLVRB function, however, remain unknown. Through a combination of NMR, kinetics, and isothermal titration calorimetry studies, we determined that BLVRB binds its coenzyme 500-fold more tightly than its substrate. While the active site of apo BLVRB is highly dynamic on multiple timescales, active site dynamics are largely quenched within holo BLVRB, in which dynamics are redistributed to other regions of the enzyme. We show that a single point mutation of Arg78➔Ala leads to both an increase in active site micro-millisecond motions and an increase in the microscopic rate constants of coenzyme binding. This demonstrates that altering BLVRB active site dynamics can directly cause a change in functional characteristics. Our studies thus address the solution behavior of apo and holo BLVRB and identify a role of enzyme dynamics in coenzyme binding.
胆红素还原酶 B(BLVRB)是一种新鉴定的细胞氧化还原调节剂,可催化多种底物的 NADPH 依赖性还原。通过质谱分析,我们在成熟的红细胞中鉴定到高水平的 BLVRB,这突出了 BLVRB 在氧化还原调节中的重要性。然而,BLVRB 在辅酶/底物结合过程中构象变化以及动力学在 BLVRB 功能中的作用仍不清楚。通过 NMR、动力学和等温滴定量热法研究的结合,我们确定 BLVRB 与辅酶的结合亲和力比其底物高 500 倍。虽然 apo BLVRB 的活性位点在多个时间尺度上具有高度的动态性,但在 holo BLVRB 中,活性位点的动力学基本上被淬灭,动力学被重新分配到酶的其他区域。我们表明,Arg78➔Ala 的单点突变导致活性位点微秒运动的增加和辅酶结合的微观速率常数的增加。这表明改变 BLVRB 活性位点动力学可以直接导致功能特性的变化。因此,我们的研究解决了 apo 和 holo BLVRB 的溶液行为,并确定了酶动力学在辅酶结合中的作用。