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证据表明海葵球蛋白基因发生了大规模扩张和亚功能化。

Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones.

机构信息

School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.

School of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.

出版信息

Genome Biol Evol. 2018 Aug 1;10(8):1892-1901. doi: 10.1093/gbe/evy128.

Abstract

The globin gene superfamily has been well-characterized in vertebrates, however, there has been limited research in early-diverging lineages, such as phylum Cnidaria. This study aimed to identify globin genes in multiple cnidarian lineages, and use bioinformatic approaches to characterize the evolution, structure, and expression of these genes. Phylogenetic analyses and in silico protein predictions showed that all cnidarians have undergone an expansion of globin genes, which likely have a hexacoordinate protein structure. Our protein modeling has also revealed the possibility of a single pentacoordinate globin lineage in anthozoan species. Some cnidarian globin genes displayed tissue and development specific expression with very few orthologous genes similarly expressed across species. Our phylogenetic analyses also revealed that eumetazoan globin genes form a polyphyletic relationship with vertebrate globin genes. Overall, our analyses suggest that a Ngb-like and GbX-like gene were most likely present in the globin gene repertoire for the last common ancestor of eumetazoans. The identification of a large-scale expansion and subfunctionalization of globin genes in actiniarians provides an excellent starting point to further our understanding of the evolution and function of the globin gene superfamily in early-diverging lineages.

摘要

球蛋白基因超家族在脊椎动物中已有很好的描述,但在早期分化的谱系中,如门刺胞动物门,研究有限。本研究旨在鉴定多种刺胞动物谱系中的球蛋白基因,并采用生物信息学方法来描述这些基因的进化、结构和表达。系统发育分析和计算机蛋白质预测表明,所有刺胞动物都经历了球蛋白基因的扩张,这些基因可能具有六配位的蛋白质结构。我们的蛋白质建模还揭示了在珊瑚物种中存在单一五配位球蛋白谱系的可能性。一些刺胞动物的球蛋白基因表现出组织和发育特异性表达,很少有直系同源基因在物种间具有相似的表达。我们的系统发育分析还表明,真后生动物的球蛋白基因与脊椎动物的球蛋白基因形成多系关系。总的来说,我们的分析表明,在真后生动物的最后共同祖先中,Ngb 样和 GbX 样基因最有可能存在于球蛋白基因库中。在栉水母门中发现了球蛋白基因的大规模扩张和亚功能化,为进一步了解球蛋白基因超家族在早期分化谱系中的进化和功能提供了一个极好的起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7113/6077788/9f81a4e812e9/evy128f1.jpg

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