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A76tRNA 2'-OH 基在防止 d-酪氨酸错译中的双重作用。

The Dual Role of the 2'-OH Group of A76 tRNA in the Prevention of d-tyrosine Mistranslation.

机构信息

Department of Protein Synthesis Enzymology, Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo Str., 03143 Kyiv, Ukraine.

Department of Protein Synthesis Enzymology, Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo Str., 03143 Kyiv, Ukraine.

出版信息

J Mol Biol. 2018 Aug 17;430(17):2670-2676. doi: 10.1016/j.jmb.2018.06.036. Epub 2018 Jun 25.

Abstract

Aminoacyl-tRNA-synthetases are crucial enzymes for initiation step of translation. Possessing editing activity, they protect living cells from misincorporation of non-cognate and non-proteinogenic amino acids into proteins. Tyrosyl-tRNA synthetase (TyrRS) does not have such editing properties, but it shares weak stereospecificity in recognition of d-/l-tyrosine (Tyr). Nevertheless, an additional enzyme, d-aminoacyl-tRNA-deacylase (DTD), exists to overcome these deficiencies. The precise catalytic role of hydroxyl groups of the tRNA A76 in the catalysis by TyrRS and DTD remained unknown. To address this issue, [P]-labeled tRNA substrates have been tested in aminoacylation and deacylation assays. TyrRS demonstrates similar activity in charging the 2' and 3'-OH groups of A76 with l-Tyr. This synthetase can effectively use both OH groups as primary sites for aminoacylation with l-Tyr, but demonstrates severe preference toward 2'-OH, in charging with d-Tyr. In both cases, the catalysis is not substrate-assisted: neither the 2'-OH nor the 3'-OH group assists catalysis. In contrast, DTD catalyzes deacylation of d-Tyr-tRNA specifically from the 3'-OH group, while the 2'-OH assists in this hydrolysis.

摘要

氨酰-tRNA 合成酶是翻译起始步骤的关键酶。它们具有编辑活性,可防止活细胞将非对应和非蛋白质氨基酸错误掺入蛋白质中。酪氨酸-tRNA 合成酶 (TyrRS) 没有这种编辑特性,但它在识别 d-/l-酪氨酸 (Tyr) 时有较弱的立体特异性。然而,存在一种额外的酶,即 d-氨酰-tRNA 脱酰酶 (DTD),以克服这些缺陷。tRNA A76 的羟基在 TyrRS 和 DTD 催化中的精确催化作用仍不清楚。为了解决这个问题,已经在氨酰化和脱酰化测定中测试了 [P] 标记的 tRNA 底物。TyrRS 在用 l-Tyr 对 A76 的 2'和 3'-OH 基团进行负载时表现出相似的活性。这种合成酶可以有效地将两个 OH 基团用作 l-Tyr 氨酰化的主要位点,但在与 d-Tyr 负载时对 2'-OH 表现出严重的偏好。在这两种情况下,催化都不是底物辅助的:2'-OH 或 3'-OH 基团都不辅助催化。相比之下,DTD 特异性地从 3'-OH 基团催化 d-Tyr-tRNA 的脱酰,而 2'-OH 有助于该水解。

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