Lehrstuhl für Biotechnologie, RWTH Aachen University, Aachen, Germany.
The Barcelona Institute of Science and Technology, Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain.
Biotechnol Bioeng. 2018 Oct;115(10):2405-2415. doi: 10.1002/bit.26785. Epub 2018 Jul 25.
Glucose oxidase (GOx) is of high industrial interest for glucose sensing because of its high β-d-glucose specificity. The efficient and specific electrochemical communication between the redox center and electrodes is crucial to ensure accurate glucose determination. The efficiency of the electron transfer rates (ETR) with GOx, together with quinone diamine based mediators, is low and differs even among mediator derivatives. To design optimized enzyme-mediator couples and to describe a mediator binding model, a joint experimental and computational study was performed based on an oxygen-independent GOx variant V7 and two quinone diimine based electron mediators (QDM-1 and QDM-2), which differ in polarity and size, and ferrocenemethanol (FM). A site saturation library at position 414 was screened with all three mediators and yielded four beneficial substitutions Tyr, Met, Leu, and Val. The variants showed increased mediator activity for the more polar QDM-2 with a simultaneously decreased activity for the less polar and smaller QDM-1 and for FM. The variant GOx V7-I414Y exhibited the biggest change for the quinone diimine derivatives compared with V7 (QDM-1: 55.9 U/mg V7, 33.2 U/mg V7-I414Y; QDM-2: 2.7 U/mg V7, 12.9 U/mg V7-I414Y). Theoretical ETR calculated based on the Marcus theory were in good agreement with the experimental results. Molecular docking studies revealed a preferable binding of the two QD mediators directly in the active site, 3.5 Å away from the N5 atom of the flavin adenine dinucleotide (FAD) and in direct vicinity to position 414. In summary, position 414 in the active site was identified to modulate the electron shuttling from the FAD of the GOx to small water-soluble mediators dependent on the polarity and size of residue 414 and on the polarity and size of the mediator. The presented mediator binding model offers a promising possibility for the design of optimized enzyme-mediator couples.
葡萄糖氧化酶(GOx)因其对β-d-葡萄糖的高特异性而在葡萄糖传感方面具有很高的工业应用价值。氧化还原中心与电极之间的高效和特异性电化学通讯对于确保准确的葡萄糖测定至关重要。GOx 与醌二亚胺基介体的电子转移速率(ETR)效率低,并且即使在介体衍生物之间也存在差异。为了设计优化的酶-介体偶联物并描述介体结合模型,进行了一项基于氧独立 GOx 变体 V7 和两种醌二亚胺基电子介体(QDM-1 和 QDM-2)的实验和计算联合研究,这两种介体在极性和大小上有所不同,还有二茂铁甲醇(FM)。使用所有三种介体筛选了位置 414 的饱和文库,得到了四个有益的取代基 Tyr、Met、Leu 和 Val。与 V7 相比,变体对更极性的 QDM-2 的介体活性增加,同时对更非极性和更小的 QDM-1 和 FM 的介体活性降低。与 V7 相比,变体 GOx V7-I414Y 对醌二亚胺衍生物的变化最大(QDM-1:55.9 U/mg V7,33.2 U/mg V7-I414Y;QDM-2:2.7 U/mg V7,12.9 U/mg V7-I414Y)。基于 Marcus 理论计算的理论 ETR 与实验结果吻合良好。分子对接研究表明,两种 QD 介体直接在活性位点中优选结合,距离黄素腺嘌呤二核苷酸(FAD)的 N5 原子 3.5 Å,并直接接近位置 414。总之,活性位点中的位置 414 被确定为调节电子从 GOx 的 FAD 到小的水溶性介体的转移,这取决于残基 414 的极性和大小以及介体的极性和大小。所提出的介体结合模型为设计优化的酶-介体偶联物提供了一个有前途的可能性。