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基因组中DNA胞嘧啶甲基化水平。

Levels of DNA cytosine methylation in the genome.

作者信息

Deshmukh Saniya, Ponnaluri Vk Chaithanya, Dai Nan, Pradhan Sriharsa, Deobagkar Deepti

机构信息

Molecular Biology Research Laboratory; Department of Zoology (Centre for Advanced Studies), Savitribai Phule Pune University (formerly University of Pune), Pune, Maharashtra, India.

New England Biolabs, Ipswich, MA, United States of America.

出版信息

PeerJ. 2018 Jul 2;6:e5119. doi: 10.7717/peerj.5119. eCollection 2018.

Abstract

Insects provide an accessible system to study the contribution of DNA methylation to complex epigenetic phenotypes created to regulate gene expression, chromatin states, imprinting and dosage compensation. The members of genus have been used as a model system to study aspects of biology like development, behaviour and genetics. Despite the popularity of as a genetic and epigenetic model organism, DNA methylation studies are limited due to low levels of genomic 5-methylcytosine. Our study employs a sensitive liquid chromatography-mass spectrometry (LCMS) based method to quantify the levels of 5-methylcytosine from the genomic DNA in different members of the genus . Our results reveal that, despite being phylogenetically related, there is a marked variation in the levels of 5-methylcytosine between the genomes of the members of genus . Also, there is a change in the genomic levels of 5-methylcytosine through each life cycle stage of holometabolous development in .

摘要

昆虫提供了一个易于研究的系统,用于探究DNA甲基化对为调控基因表达、染色质状态、印记和剂量补偿而产生的复杂表观遗传表型的贡献。该属的成员已被用作研究发育、行为和遗传学等生物学方面的模型系统。尽管该属作为遗传和表观遗传模型生物很受欢迎,但由于基因组中5-甲基胞嘧啶水平较低,DNA甲基化研究受到限制。我们的研究采用了一种基于灵敏液相色谱-质谱联用(LCMS)的方法,来定量该属不同成员基因组DNA中的5-甲基胞嘧啶水平。我们的结果表明,尽管在系统发育上相关,但该属成员的基因组之间5-甲基胞嘧啶水平存在显著差异。此外,在该属全变态发育的每个生命周期阶段,基因组中5-甲基胞嘧啶水平都有变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/830d/6033079/64f5e783e7e9/peerj-06-5119-g001.jpg

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