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对僵尸真菌 Ophiocordyceps 中多样化选择的基因组扫描表明肠毒素在共同进化和宿主特异性中起作用。

A genome scan of diversifying selection in Ophiocordyceps zombie-ant fungi suggests a role for enterotoxins in co-evolution and host specificity.

机构信息

Ecologie Systématique Evolution, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France.

National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Development Agency (NSTDA), Klhong Luang, Thailand.

出版信息

Mol Ecol. 2018 Sep;27(18):3582-3598. doi: 10.1111/mec.14813. Epub 2018 Aug 29.

Abstract

Identification of the genes underlying adaptation sheds light on the biological functions targeted by natural selection. Searches for footprints of positive selection, in the form of rapid amino acid substitutions, and the identification of species-specific genes have proved to be powerful approaches to identifying the genes involved in host specialization in plant-pathogenic fungi. We used an evolutionary comparative genomic approach to identify genes underlying host adaptation in the ant-infecting genus Ophiocordyceps, which manipulates ant behaviour. A comparison of the predicted genes in the genomes of species from three species complexes-O. unilateralis, O. australis and O. subramanianii-revealed an enrichment in pathogenesis-associated functions, including heat-labile enterotoxins, among species-specific genes. Furthermore, these genes were overrepresented among those displaying significant footprints of positive selection. Other categories of genes suspected to be important for virulence and pathogenicity in entomopathogenic fungi (e.g., chitinases, lipases, proteases, core secondary metabolism genes) were much less represented, although a few candidate genes were found to evolve under positive selection. An analysis including orthologs from other entomopathogenic fungi in a broader context showed that positive selection on enterotoxins was specific to the ant-infecting genus Ophiocordyceps. Together with previous studies reporting the overexpression of an enterotoxin during behavioural manipulation in diseased ants, our findings suggest that heat-labile enterotoxins are important effectors in host adaptation and co-evolution in the Ophiocordyceps entomopathogenic fungi.

摘要

鉴定适应相关基因有助于阐明自然选择作用的生物学功能。寻找快速氨基酸替换形式的正选择足迹以及鉴定物种特异性基因已被证明是鉴定植物病原真菌中宿主专化相关基因的有效方法。我们使用进化比较基因组学方法来鉴定感染蚂蚁的虫草属(Ophiocordyceps)中与宿主适应相关的基因,该属可操纵蚂蚁的行为。对来自三个种复合体(O. unilateralalis、O. australis 和 O. subramanianii)的物种基因组中的预测基因进行比较,结果发现物种特异性基因中富含与发病相关的功能,包括热不稳定肠毒素。此外,这些基因在显示出显著正选择足迹的基因中过度表达。其他被认为对昆虫病原真菌的毒力和致病性很重要的基因类别(如几丁质酶、脂肪酶、蛋白酶、核心次级代谢基因)的代表性较低,尽管发现了一些候选基因在正选择下进化。在更广泛的背景下包括其他昆虫病原真菌的同源基因进行的分析表明,肠毒素的正选择是感染蚂蚁的虫草属特有的。结合先前报道的在患病蚂蚁的行为操纵过程中肠毒素过度表达的研究结果,我们的发现表明热不稳定肠毒素是宿主适应和虫草属昆虫病原真菌共同进化中的重要效应因子。

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