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蓝藻中应激反应性小RNA的发现与应用

Discovery and Application of Stress-Responsive sRNAs in Cyanobacteria.

作者信息

Sun Tao, Pei Guangsheng, Song Xinyu, Chen Lei, Zhang Weiwen

机构信息

Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, China.

Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin, China.

出版信息

Adv Exp Med Biol. 2018;1080:55-74. doi: 10.1007/978-981-13-0854-3_3.

Abstract

Bacterial small regulatory RNAs (sRNAs) are noncoding molecules with a typical length of 50-300 nt. In recent years, sRNAs have drawn notable attention due to their participation in various bacterial biological processes, such as plasmid control, viral replication, bacterial virulence, and quorum sensing. In addition, there has been a gradual realization that sRNAs play important roles in the response to various stress perturbations. Gram-negative cyanobacteria are autotrophic prokaryotes that perform oxygenic photosynthesis, which makes them promising renewable chassis for the production of green fuels and chemicals as an alternative to the traditional biomass-based "microbial cell factory." Nevertheless, the survival and growth of cyanobacteria are affected by multiple stressors derived from the environment and from the end products; these organisms synthesize, limiting the potential applications of cyanobacteria-based biotechnology. Given the importance of sRNAs in metabolic regulation, the identification of cyanobacterial sRNAs related to stress responses could be vital for further improving the stress tolerance of cyanobacterial chassis. Toward this goal, recent studies have described the discovery and functional characterization of a series of sRNAs related to stress responses, including responses to oxidative stress, salt, nutrient starvation, and ethanol and 1-butanol stress conditions. In this chapter, we critically review recent efforts to identify cyanobacterial sRNAs involved in stress responses and their potential applications for modifying cyanobacterial tolerance.

摘要

细菌小调控RNA(sRNA)是一类非编码分子,典型长度为50 - 300个核苷酸。近年来,sRNA因其参与多种细菌生物学过程而备受关注,这些过程包括质粒调控、病毒复制、细菌毒力和群体感应。此外,人们逐渐认识到sRNA在应对各种应激扰动中发挥着重要作用。革兰氏阴性蓝细菌是进行产氧光合作用的自养原核生物,这使其成为生产绿色燃料和化学品的有前景的可再生底盘,可替代传统的基于生物质的“微生物细胞工厂”。然而,蓝细菌的生存和生长受到来自环境和终产物的多种应激源的影响;这些生物体的合成受到限制,这限制了基于蓝细菌的生物技术的潜在应用。鉴于sRNA在代谢调控中的重要性,鉴定与应激反应相关的蓝细菌sRNA对于进一步提高蓝细菌底盘的应激耐受性可能至关重要。为了实现这一目标,最近的研究描述了一系列与应激反应相关的sRNA的发现和功能表征,包括对氧化应激、盐、营养饥饿以及乙醇和1 - 丁醇应激条件的反应。在本章中,我们批判性地回顾了最近在鉴定参与应激反应的蓝细菌sRNA及其用于改变蓝细菌耐受性的潜在应用方面所做的努力。

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