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利用细胞内抗体片段筛选 RAS-效应蛋白相互作用的小分子抑制剂。

Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment.

机构信息

Weatherall Institute of Molecular Medicine, MRC Molecular Haematology Unit, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.

Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot, Oxon, OX11 0FA, UK.

出版信息

Nat Commun. 2018 Aug 9;9(1):3169. doi: 10.1038/s41467-018-05707-2.


DOI:10.1038/s41467-018-05707-2
PMID:30093669
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6085350/
Abstract

Targeting specific protein-protein interactions (PPIs) is an attractive concept for drug development, but hard to implement since intracellular antibodies do not penetrate cells and most small-molecule drugs are considered unsuitable for PPI inhibition. A potential solution to these problems is to select intracellular antibody fragments to block PPIs, use these antibody fragments for target validation in disease models and finally derive small molecules overlapping the antibody-binding site. Here, we explore this strategy using an anti-mutant RAS antibody fragment as a competitor in a small-molecule library screen for identifying RAS-binding compounds. The initial hits are optimized by structure-based design, resulting in potent RAS-binding compounds that interact with RAS inside the cells, prevent RAS-effector interactions and inhibit endogenous RAS-dependent signalling. Our results may aid RAS-dependent cancer drug development and demonstrate a general concept for developing small compounds to replace intracellular antibody fragments, enabling rational drug development to target validated PPIs.

摘要

靶向特定的蛋白质-蛋白质相互作用(PPIs)是药物开发的一个有吸引力的概念,但由于细胞内抗体不能穿透细胞,并且大多数小分子药物被认为不适合 PPI 抑制,因此很难实现。解决这些问题的一个潜在方法是选择细胞内抗体片段来阻断 PPI,使用这些抗体片段在疾病模型中进行靶标验证,最后得出与抗体结合位点重叠的小分子。在这里,我们使用抗突变 RAS 抗体片段作为小分子文库筛选中的竞争性物来探索这种策略,以鉴定与 RAS 结合的化合物。最初的命中物通过基于结构的设计进行优化,得到了与细胞内 RAS 相互作用、阻止 RAS 效应物相互作用并抑制内源性 RAS 依赖性信号传导的有效 RAS 结合化合物。我们的结果可能有助于依赖 RAS 的癌症药物开发,并证明了开发替代细胞内抗体片段的小分子的一般概念,从而能够针对已验证的 PPI 进行合理的药物开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/ebc065a4377a/41467_2018_5707_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/4d1edd02ca28/41467_2018_5707_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/65c6ecf59718/41467_2018_5707_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/1a8bb113ff16/41467_2018_5707_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/9efd5e714532/41467_2018_5707_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/6917522fdf7c/41467_2018_5707_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/ebc065a4377a/41467_2018_5707_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/4d1edd02ca28/41467_2018_5707_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/65c6ecf59718/41467_2018_5707_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/1a8bb113ff16/41467_2018_5707_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/9efd5e714532/41467_2018_5707_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/6917522fdf7c/41467_2018_5707_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e97/6085350/ebc065a4377a/41467_2018_5707_Fig6_HTML.jpg

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[2]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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本文引用的文献

[1]
BRET-based RAS biosensors that show a novel small molecule is an inhibitor of RAS-effector protein-protein interactions.

Elife. 2018-7-10

[2]
Importance of Rigidity in Designing Small Molecule Drugs To Tackle Protein-Protein Interactions (PPIs) through Stabilization of Desired Conformers.

J Med Chem. 2017-11-28

[3]
RAS Proteins and Their Regulators in Human Disease.

Cell. 2017-6-29

[4]
Antibody targeting intracellular oncogenic Ras mutants exerts anti-tumour effects after systemic administration.

Nat Commun. 2017-5-10

[5]
Pharmacological property optimization for allosteric ligands: A medicinal chemistry perspective.

Bioorg Med Chem Lett. 2017-6-1

[6]
Protein-ligand binding affinity determination by the waterLOGSY method: An optimised approach considering ligand rebinding.

Sci Rep. 2017-3-3

[7]
Multivalent Small-Molecule Pan-RAS Inhibitors.

Cell. 2017-2-23

[8]
Interaction of Avibactam with Class B Metallo-β-Lactamases.

Antimicrob Agents Chemother. 2016-9-23

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A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.

Cell. 2016-4-21

[10]
Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.

Nat Rev Drug Discov. 2016-4-11

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