Brazilian Biosciences National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo, 13083-970, Brazil.
Department of Internal Medicine, School of Medicine, University of Campinas, Campinas, São Paulo, 13081-970, Brazil.
Sci Rep. 2018 Aug 10;8(1):11988. doi: 10.1038/s41598-018-30418-5.
Adenosine Kinase (ADK) regulates the cellular levels of adenosine (ADO) by fine-tuning its metabolic clearance. The transfer of γ-phosphate from ATP to ADO by ADK involves regulation by the substrates and products, as well as by Mg and inorganic phosphate. Here we present new crystal structures of mouse ADK (mADK) binary (mADK:ADO; 1.2 Å) and ternary (mADK:ADO:ADP; 1.8 Å) complexes. In accordance with the structural demonstration of ADO occupancy of the ATP binding site, kinetic studies confirmed a competitive model of auto-inhibition of ADK by ADO. In the ternary complex, a K ion is hexacoordinated between loops adjacent to the ATP binding site, where Asp310 connects the K coordination sphere to the ATP binding site through an anion hole structure. Nuclear Magnetic Resonance 2D N-H HSQC experiments revealed that the binding of K perturbs Asp310 and residues of adjacent helices 14 and 15, engaging a transition to a catalytically productive structure. Consistent with the structural data, the mutants D310A and D310P are catalytically deficient and loose responsiveness to K. Saturation Transfer Difference spectra of ATPγS provided evidence for an unfavorable interaction of the mADK D310P mutant for ATP. Reductions in K concentration diminish, whereas increases enhance the in vitro activity of mADK (maximum of 2.5-fold; apparent K = 10.4 mM). Mechanistically, K increases the catalytic turnover (K) but does not affect the affinity of mADK for ADO or ATP. Depletion of intracellular K inhibited, while its restoration was accompanied by a full recovery of cellular ADK activity. Together, this novel dataset reveals the molecular basis of the allosteric activation of ADK by K and highlights the role of ADK in connecting depletion of intracellular K to the regulation of purine metabolism.
腺苷激酶(ADK)通过微调其代谢清除率来调节细胞内腺苷(ADO)的水平。ADK 将 γ-磷酸从 ATP 转移到 ADO 的过程受到底物和产物的调节,以及 Mg 和无机磷酸盐的调节。在这里,我们呈现了新的小鼠 ADK(mADK)二元(mADK:ADO;1.2Å)和三元(mADK:ADO:ADP;1.8Å)复合物的晶体结构。根据结构上对 ADO 占据 ATP 结合位点的证明,动力学研究证实了 ADO 对 ADK 的自动抑制是竞争性的。在三元复合物中,一个 K 离子在与 ATP 结合位点相邻的环之间六配位,其中 Asp310 通过阴离子孔结构将 K 配位球与 ATP 结合位点连接起来。二维 N-H HSQC 核磁共振实验表明,K 的结合使 Asp310 和相邻螺旋 14 和 15 的残基发生扰动,从而使结构过渡到具有催化活性的结构。与结构数据一致,突变体 D310A 和 D310P 缺乏催化活性,对 K 的反应性降低。ATPγS 的饱和转移差异谱提供了证据表明 mADK D310P 突变体与 ATP 的相互作用不利。降低 K 浓度会降低,而增加 K 浓度会增强 mADK 的体外活性(最大 2.5 倍;表观 K=10.4mM)。从机制上讲,K 增加了催化周转率(K),但不影响 mADK 对 ADO 或 ATP 的亲和力。细胞内 K 的耗竭抑制了 ADK 的活性,而其恢复伴随着细胞 ADK 活性的完全恢复。总之,这个新的数据集揭示了 K 对 ADK 的别构激活的分子基础,并强调了 ADK 在将细胞内 K 的耗竭与嘌呤代谢的调节联系起来的作用。