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未表征的人类蛋白质C15orf41从结构建模到功能预测

Structure modeling to function prediction of Uncharacterized Human Protein C15orf41.

作者信息

Ahmed Md Shakil, Shahjaman Md, Kabir Enamul, Kamruzzaman Md

机构信息

Department of Statistics, University of Rajshahi, Rajshahi-6205, Bangladesh.

Department of Statistics, Begum Rokeya University, Rangpur-5400, Bangladesh.

出版信息

Bioinformation. 2018 May 31;14(5):206-212. doi: 10.6026/97320630014206. eCollection 2018.

Abstract

The dyserythropoietic anemia disease is a genetic disorder of erythropoiesis characterized by morphological abnormalities of erythroblasts. This is caused by human gene C15orf41 mutation. The uncharacterized C15orf41 protein is involved in the formation of a functional complex structure. The uncharacterized C15orf41 protein is thermostable, unstable and acidic. This is associated with TPD (Treponema Pallidum) domain (135 to 265 residue position) and three PTM sites such as K50 (Acetylation), T114 (Phosphorylation) and K176 (Ubiquitination). C15orf41 is paralogous to isoform-1 (gi|194018542|) and open reading frame isoform-CRA_c (gi|119612744|) of Homo sapiens located at chromosome 15. It interacts with the human ATP (Adenosine Triphosphate) binding domain 4 (ATPBD4) having similarity score 0.725 as per protein-protein interaction (PPI) network analysis. This data provides valuable insights towards the functional characterization of human gene C15orf41.

摘要

异常红细胞生成性贫血疾病是一种红细胞生成的遗传性疾病,其特征为成红细胞的形态异常。这是由人类基因C15orf41突变引起的。未表征的C15orf41蛋白参与功能性复合结构的形成。未表征的C15orf41蛋白具有热稳定性、不稳定性且呈酸性。这与TPD(梅毒螺旋体)结构域(第135至265个残基位置)以及三个PTM位点相关,如K50(乙酰化)、T114(磷酸化)和K176(泛素化)。C15orf41与位于15号染色体上的智人的异构体-1(gi|194018542|)和开放阅读框异构体-CRA_c(gi|119612744|)是旁系同源物。根据蛋白质-蛋白质相互作用(PPI)网络分析,它与人类ATP(三磷酸腺苷)结合结构域4(ATPBD4)相互作用,相似性得分0.725。该数据为人类基因C15orf41的功能表征提供了有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e707/6077826/503824bbc44b/97320630014206F1.jpg

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