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Redox pathways in electron-transfer proteins: correlations between reactivities, solvent exposure, and unpaired-spin-density distributions.电子传递蛋白中的氧化还原途径:反应活性、溶剂暴露与未成对自旋密度分布之间的相关性。
Proc Natl Acad Sci U S A. 1986 Jun;83(11):3693-7. doi: 10.1073/pnas.83.11.3693.
2
Correlation between rate constant for reduction and redox potential as a basis for systematic investigation of reaction mechanisms of electron transfer proteins.还原速率常数与氧化还原电位之间的相关性作为电子传递蛋白反应机制系统研究的基础。
Proc Natl Acad Sci U S A. 1983 Nov;80(22):6740-4. doi: 10.1073/pnas.80.22.6740.
3
A comparison of the structures of electron transfer proteins.
Biochim Biophys Acta. 1979 Aug 17;549(2):107-44. doi: 10.1016/0304-4173(79)90012-0.
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Function of the iron-sulfur protein of the cytochrome b-c1 segment in electron-transfer and energy-conserving reactions of the mitochondrial respiratory chain.细胞色素b-c1区段铁硫蛋白在线粒体呼吸链电子传递和能量保存反应中的作用。
Biochim Biophys Acta. 1981 Dec 4;639(2):129-55. doi: 10.1016/0304-4173(81)90008-2.
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Interaction of cytochrome c with the blue copper proteins, plastocyanin and azurin.细胞色素c与蓝色铜蛋白、质体蓝素和天青蛋白的相互作用。
J Biol Chem. 1983 May 25;258(10):6405-9.
6
Oxidation state dependence of proton exchange near the iron-sulfur centers in ferredoxins and high-potential iron-sulfur proteins.
Biochim Biophys Acta. 1983 Oct 17;748(1):68-72. doi: 10.1016/0167-4838(83)90028-6.
7
Electron transfer reactions of high-potential iron-sulfur proteins and c-type cytochromes.
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Kinetics of electron transfer between cytochromes c' and the semiquinones of free flavin and clostridial flavodoxin.
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Electron-transfer protein reactivities. Kinetic studies of the oxidation of horse heart cytochrome c, Chromatium vinosum high potential iron-sulfur protein, Pseudomonas aeruginosa azurin, bean plastocyanin, and Rhus vernicifera stellacyanin by pentaamminepyridineruthenium(III).电子转移蛋白反应活性。五氨吡啶钌(III)氧化马心细胞色素c、嗜硫小红卵菌高电位铁硫蛋白、铜绿假单胞菌天青蛋白、豆质体蓝素和漆树漆蓝蛋白的动力学研究。
J Am Chem Soc. 1977 Jul 20;99(15):5158-67. doi: 10.1021/ja00457a042.

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J Mol Model. 2011 Nov;17(11):2919-25. doi: 10.1007/s00894-011-0993-8. Epub 2011 Feb 12.
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Reactivity of reduced [2Fe-2S] ferredoxins parallels host susceptibility to nitroimidazoles.还原型[2Fe-2S]铁氧化还原蛋白的反应性与宿主对硝基咪唑类药物的敏感性相似。
Antimicrob Agents Chemother. 2003 Jan;47(1):302-8. doi: 10.1128/AAC.47.1.302-308.2003.
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Electrostatic and steric control of electron self-exchange in cytochromes c, c551, and b5.细胞色素c、c551和b5中电子自交换的静电和空间控制
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Electrostatic control of midpoint potentials in the cytochrome subunit of the Rhodopseudomonas viridis reaction center.绿脓杆菌反应中心细胞色素亚基中点电位的静电控制
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本文引用的文献

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.蛋白质二级结构词典:氢键和几何特征的模式识别
Biopolymers. 1983 Dec;22(12):2577-637. doi: 10.1002/bip.360221211.
2
Correlation between rate constant for reduction and redox potential as a basis for systematic investigation of reaction mechanisms of electron transfer proteins.还原速率常数与氧化还原电位之间的相关性作为电子传递蛋白反应机制系统研究的基础。
Proc Natl Acad Sci U S A. 1983 Nov;80(22):6740-4. doi: 10.1073/pnas.80.22.6740.
3
Individual 1H-NMR assignments for the heme groups and the axially bound amino acids and determination of the coordination geometry at the heme iron in a mixture of two isocytochromes c-551 from Rhodopseudomonas gelatinosa.对来自明胶红假单胞菌的两种异细胞色素c-551混合物中血红素基团和轴向结合氨基酸进行的1H-NMR归属以及血红素铁配位几何结构的测定。
Biochim Biophys Acta. 1983 Feb 28;743(1):69-81. doi: 10.1016/0167-4838(83)90419-3.
4
Determination of the coordination geometry at the heme iron in three cytochromes c from Saccharomyces cerevisiae and from Candida krusei based on individual 1H-NMR assignments for heme c and the axially coordinated amino acids.基于血红素c及轴向配位氨基酸的单个¹H-NMR归属,确定酿酒酵母和克鲁斯假丝酵母中三种细胞色素c的血红素铁配位几何结构。
Biochim Biophys Acta. 1983 Feb 28;743(1):58-68. doi: 10.1016/0167-4838(83)90418-1.
5
Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.铜绿假单胞菌细胞色素c551在1.6埃分辨率下的结构及两种氧化还原形式的比较
J Mol Biol. 1982 Apr 5;156(2):389-409. doi: 10.1016/0022-2836(82)90335-7.
6
Electron transfer between flavodoxin semiquinone and c-type cytochromes: correlations between electrostatically corrected rate constants, redox potentials, and surface topologies.黄素氧还蛋白半醌与c型细胞色素之间的电子转移:静电校正速率常数、氧化还原电位和表面拓扑结构之间的相关性
Biochemistry. 1984 Dec 18;23(26):6345-9. doi: 10.1021/bi00321a009.
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Electron-transfer reactions of photoreduced flavin analogues with c-type cytochromes: quantitation of steric and electrostatic factors.光还原黄素类似物与c型细胞色素的电子转移反应:空间和静电因素的定量分析
Biochemistry. 1984 Sep 25;23(20):4761-7. doi: 10.1021/bi00315a035.
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The interpretation of protein structures: estimation of static accessibility.蛋白质结构的解读:静态可及性的评估
J Mol Biol. 1971 Feb 14;55(3):379-400. doi: 10.1016/0022-2836(71)90324-x.
9
Kinetics of reduction of high redox potential ferredoxins by the semiquinones of Clostridium pasteurianum flavodoxin and exogenous flavin mononucleotide. Electrostatic and redox potential effects.巴氏芽孢梭菌黄素氧还蛋白和外源性黄素单核苷酸的半醌对高氧化还原电位铁氧化还原蛋白的还原动力学。静电和氧化还原电位效应。
Biochemistry. 1985 Sep 24;24(20):5647-52. doi: 10.1021/bi00341a054.
10
Kinetics of electron transfer between cytochromes c' and the semiquinones of free flavin and clostridial flavodoxin.
Biochemistry. 1986 Mar 25;25(6):1383-90. doi: 10.1021/bi00354a029.

电子传递蛋白中的氧化还原途径:反应活性、溶剂暴露与未成对自旋密度分布之间的相关性。

Redox pathways in electron-transfer proteins: correlations between reactivities, solvent exposure, and unpaired-spin-density distributions.

作者信息

Tollin G, Hanson L K, Caffrey M, Meyer T E, Cusanovich M A

出版信息

Proc Natl Acad Sci U S A. 1986 Jun;83(11):3693-7. doi: 10.1073/pnas.83.11.3693.

DOI:10.1073/pnas.83.11.3693
PMID:3012528
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC323589/
Abstract

The relative reactivities toward reduction by free flavin semiquinones of cytochromes (c-type cytochromes, cytochrome b5, c'-type cytochromes) iron-sulfur proteins (high-redox-potential ferredoxins, rubredoxins, low-redox-potential ferredoxins), and blue copper proteins (plastocyanin, azurins) are shown to correlate with calculations of the solvent exposure of the various prosthetic groups. In the case of the c-type cytochromes, one of the major centers of exposure is the sulfur atom of the thioether bridge that covalently links heme ring C to the protein. Charge-iterative extended Hückel calculations on a heme c model indicate that both porphyrin pi and Fe(III)d pi orbitals can delocalize onto the bridging sulfur atom. Unpaired spin densities are comparable to those obtained for individual aromatic porphyrin ring carbon atoms. Thus, the exposed sulfur of ring C may act to facilitate electron transfer.

摘要

细胞色素(c型细胞色素、细胞色素b5、c'型细胞色素)、铁硫蛋白(高氧化还原电位铁氧化还原蛋白、红素氧还蛋白、低氧化还原电位铁氧化还原蛋白)和蓝铜蛋白(质体蓝素、天青蛋白)对游离黄素半醌还原的相对反应性与各种辅基的溶剂暴露计算结果相关。对于c型细胞色素,主要的暴露中心之一是将血红素环C与蛋白质共价连接的硫醚桥的硫原子。对血红素c模型进行的电荷迭代扩展休克尔计算表明,卟啉π轨道和Fe(III)dπ轨道都可以离域到桥连硫原子上。未成对自旋密度与单个芳香卟啉环碳原子的自旋密度相当。因此,环C暴露的硫可能有助于促进电子转移。