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对来自明胶红假单胞菌的两种异细胞色素c-551混合物中血红素基团和轴向结合氨基酸进行的1H-NMR归属以及血红素铁配位几何结构的测定。

Individual 1H-NMR assignments for the heme groups and the axially bound amino acids and determination of the coordination geometry at the heme iron in a mixture of two isocytochromes c-551 from Rhodopseudomonas gelatinosa.

作者信息

Senn H, Wüthrich K

出版信息

Biochim Biophys Acta. 1983 Feb 28;743(1):69-81. doi: 10.1016/0167-4838(83)90419-3.

DOI:10.1016/0167-4838(83)90419-3
PMID:6297597
Abstract

This paper describes chemical and physicochemical studies of two small isocytochromes c-551 (approx. 9000 dalton) from Rhodopseudomonas gelatinosa. In spite of numerous amino acid substitutions in the N-terminal half of the sequence the two isoproteins could not be separated by the procedures used, presumably because they have identical size, charge and isoelectric points. Individual assignments of the 1H-NMR lines of heme c and the axial ligands to the heme iron were therefore obtained by nuclear Overhauser enhancement measurements and saturation transfer experiments in a mixed solution of the two isocytochromes c-551. The conformation of the coordination sphere was investigated by additional 1H-NMR and circular dichroism studies. For both isoproteins the electronic structure of the heme and the chirality of the methionine attachment to the iron were found to coincide with those in Pseudomonas cytochromes c-551, i.e., S chirality was observed for the axial methionine. The Rps. gelatinosa cytochromes c-551 thus differ from mammalian, yeast, Euglena gracilis and Rhodospirillum rubrum cytochromes c, which all have R chirality at the axial methionine and concomitantly a characteristically different electronic heme structure. This is the first observation of S chirality of the axially bound methionine in a species outside the Pseudomonas family. The redox potentials of the two isocytochromes c-551 of Rps. gelatinosa differ by approx. 120 mV, and there is no cross-exchange of electrons between the two species. The two isoproteins could thus function in two different, parallel electron-transfer chains or at two different locations in a single transfer sequence.

摘要

本文描述了对来自明胶红假单胞菌的两种小细胞色素c-551(约9000道尔顿)的化学和物理化学研究。尽管在序列的N端一半有大量氨基酸取代,但使用的方法无法分离这两种同型蛋白,大概是因为它们具有相同的大小、电荷和等电点。因此,通过在两种细胞色素c-551的混合溶液中进行核Overhauser增强测量和饱和转移实验,获得了血红素c的1H-NMR谱线以及血红素铁的轴向配体的单独归属。通过额外的1H-NMR和圆二色性研究对配位球的构象进行了研究。对于这两种同型蛋白,发现血红素的电子结构和蛋氨酸与铁的连接手性与假单胞菌细胞色素c-551中的一致,即轴向蛋氨酸观察到S手性。因此,明胶红假单胞菌细胞色素c-551与哺乳动物、酵母、纤细裸藻和红螺菌的细胞色素c不同,后者在轴向蛋氨酸处都具有R手性,并且伴随着特征性不同的电子血红素结构。这是在假单胞菌科以外的物种中首次观察到轴向结合蛋氨酸的S手性。明胶红假单胞菌的两种细胞色素c-551的氧化还原电位相差约120 mV,并且这两种物种之间没有电子的交叉交换。因此,这两种同型蛋白可以在两条不同的平行电子传递链中起作用,或者在单个传递序列中的两个不同位置起作用。

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Individual 1H-NMR assignments for the heme groups and the axially bound amino acids and determination of the coordination geometry at the heme iron in a mixture of two isocytochromes c-551 from Rhodopseudomonas gelatinosa.对来自明胶红假单胞菌的两种异细胞色素c-551混合物中血红素基团和轴向结合氨基酸进行的1H-NMR归属以及血红素铁配位几何结构的测定。
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引用本文的文献

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Spectroscopic characterization of a newly isolated cytochrome P450 from Rhodococcus rhodochrous.来自红平红球菌的新分离细胞色素P450的光谱表征
Biophys J. 1993 Aug;65(2):806-13. doi: 10.1016/S0006-3495(93)81122-6.
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The spatial structure of the axially bound methionine in solution conformations of horse ferrocytochrome c and Pseudomonas aeruginosa ferrocytochrome c551 by 1H NMR.
通过1H NMR研究马亚铁细胞色素c和铜绿假单胞菌亚铁细胞色素c551溶液构象中轴向结合蛋氨酸的空间结构。
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4
Proton hyperfine resonance assignments using the nuclear Overhauser effect for ferric forms of horse and tuna cytochrome c.利用核Overhauser效应进行马和金枪鱼细胞色素c铁形式的质子超精细共振归属
Biophys J. 1987 Jul;52(1):101-7. doi: 10.1016/S0006-3495(87)83193-4.
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Redox pathways in electron-transfer proteins: correlations between reactivities, solvent exposure, and unpaired-spin-density distributions.电子传递蛋白中的氧化还原途径:反应活性、溶剂暴露与未成对自旋密度分布之间的相关性。
Proc Natl Acad Sci U S A. 1986 Jun;83(11):3693-7. doi: 10.1073/pnas.83.11.3693.