Department of Chemistry , Boston College , Chestnut Hill , Massachusetts 02467 , United States.
Department of Biochemistry and Molecular Biology , University of Massachusetts Amherst , Amherst , Massachusetts 01003 , United States.
Chem Rev. 2018 Sep 26;118(18):8435-8473. doi: 10.1021/acs.chemrev.8b00208. Epub 2018 Aug 27.
Phosphatidylinositol-specific phospholipase C (PI-PLC) enzymes from Gram-positive bacteria are secreted virulence factors that aid in downregulating host immunity. These PI-PLCs are minimalist peripheral membrane enzymes with a distorted (βα) TIM barrel fold offering a conserved and stable scaffold for the conserved catalytic amino acids while membrane recognition is achieved mostly through variable loops. Decades of experimental and computational research on these enzymes have revealed the subtle interplay between molecular mechanisms of catalysis and membrane binding, leading to a semiquantitative model for how they find, bind, and cleave their respective substrates on host cell membranes. Variations in sequence and structure of their membrane binding sites may correlate with how enzymes from different Gram-positive bacteria search for their particular targets on the membrane. Detailed molecular characterization of protein-lipid interactions have been aided by cutting-edge methods ranging from P field-cycling NMR relaxometry to monitor protein-induced changes in phospholipid dynamics to molecular dynamics simulations to elucidate the roles of electrostatic and cation-π interactions in lipid binding to single molecule fluorescence measurements of dynamic interactions between PI-PLCs and vesicles. This toolkit is readily applicable to other peripheral membrane proteins including orthologues in Gram-negative bacteria and more recently discovered eukaryotic minimalist PI-PLCs.
磷脂酰肌醇特异性磷脂酶 C(PI-PLC)是革兰氏阳性菌分泌的一种毒力因子,有助于下调宿主的免疫反应。这些 PI-PLC 是最小的外周膜酶,具有扭曲的(βα)TIM 桶折叠结构,为保守和稳定的催化氨基酸提供了支架,而膜识别主要通过可变环实现。几十年来对这些酶的实验和计算研究揭示了催化和膜结合分子机制之间的微妙相互作用,从而得出了一个关于它们如何在宿主细胞膜上找到、结合和切割各自底物的半定量模型。其膜结合位点的序列和结构的变化可能与来自不同革兰氏阳性菌的酶如何在膜上寻找其特定靶标有关。从 P 场循环 NMR 弛豫来监测磷脂动力学的蛋白诱导变化,到阐明静电和阳离子-π 相互作用在脂质结合中的作用的分子动力学模拟,再到单分子荧光测量 PI-PLC 与囊泡之间的动态相互作用,这些前沿方法有助于对蛋白-脂相互作用进行详细的分子特征分析。这个工具包可广泛应用于其他外周膜蛋白,包括革兰氏阴性菌中的同源物,以及最近发现的真核最小 PI-PLC。